Gene
| Gene Model ID | pfu_aug1.0_21.1_21917 |
|---|---|
| Locus | scaffold21.1 : 86542 ... 93035 : - |
| To GenomeBrowser | scaffold21.1:86542..93035 |
| Genes list of scaffold | scaffold21.1 |
| Synonym | pfu_aug2.0_445.1_17442 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_21.1_21917.t1 | 1 | 1 | PID | 19 | 144 | 2.2e-13 | 50.3 | 1.6e-16 | 3.9e-13 | 49.5 |
| pfu_aug1.0_21.1_21917.t1 | 1 | 1 | PID_2 | 19 | 152 | 1.6e-22 | 80.0 | 8.4e-26 | 2.1e-22 | 79.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_21.1_21917.t1 | gi|147898522|ref|NP_001085882.1| | MGC80983 protein [Xenopus laevis] | 5.0e-17 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_21.1_21917.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21.1_21917.t1 atgttcaacagtgctactaaggtccgtgcaagtataaccgagacagacccagtcttcaaaggacgttatttgggatttac agagacttttgtcgccagcggaacagggtgtacaataaaacatgttcagactatgtgggacaacgctggttctgaaaagc atatgaaaaaagttgtactcgtcttgaacacttctggaattttgatgaaagaagagggtaagaagaaggataaaggacaa cattttcccatagaaaatatttcattttgtaacgcagatgcaaatatcgaaagagtgttcagttggatatgtaaggaaga ggacagtcccaaactgctgtgtcatgccatattgtgcagtgatagcgagggcgcaaaagcaatgtcgcttgttatgtcac gtgcttttcaaatagcttataaggaatggaaaactcataaatctcgagagctgagagaaagccgaaaaggaaaagtgccg gagcaaattatccgaaagcaaagcaacaattctgtactgacagaggacacagtctcggcgagtggtagtgaacacgagtc agagtcgggattcagtggaattggaaaaactttgtcagaaagaaaggaatcagagaatcaaactgatattgacaatgtat ctagcattctaaggtcttctttgaatatgaatggttcactatcagaaaaccaatcctaa |
|
Protein
| Protein ID | pfu_aug1.0_21.1_21917.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21.1_21917.t1 MFNSATKVRASITETDPVFKGRYLGFTETFVASGTGCTIKHVQTMWDNAGSEKHMKKVVLVLNTSGILMKEEGKKKDKGQ HFPIENISFCNADANIERVFSWICKEEDSPKLLCHAILCSDSEGAKAMSLVMSRAFQIAYKEWKTHKSRELRESRKGKVP EQIIRKQSNNSVLTEDTVSASGSEHESESGFSGIGKTLSERKESENQTDIDNVSSILRSSLNMNGSLSENQS |
|