Gene
| Gene Model ID | pfu_aug1.0_21058.1_54728 |
|---|---|
| Locus | scaffold21058.1 : 1 ... 3314 : + |
| To GenomeBrowser | scaffold21058.1:1..3314 |
| Genes list of scaffold | scaffold21058.1 |
| Synonym | pfu_aug2.0_111.1_03631 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_21058.1_54728.t1 | 2 | 1 | ETF_alpha | 27 | 27 | 1.3e-38 | 130.5 | 0.24 | 3600.0 | -2.4 |
| pfu_aug1.0_21058.1_54728.t1 | 2 | 2 | ETF_alpha | 60 | 144 | 1.3e-38 | 130.5 | 1.60028e-42 | 2.4e-38 | 129.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_21058.1_54728.t1 | gi|260829943|ref|XP_002609921.1| | hypothetical protein BRAFLDRAFT_124360 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_21058.1_54728.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21058.1_54728.t1 gtaatgccattcagacagtgaagtcaaaggactcggttaaactgattaccgtcagaggtactgcatttgaagctgcccag gtagagggaggaagtggggctacagagcaagctccaacagttgatgtcaagaatgaattatcagagtttgtttcacaaga gttgaccaagagtgaccgtccagaattgaccagtgccaggacagttgtgtcaggaggtagaggaatgaagaatggtgata actttaagctgttgtatgaccttgctgacaagatgaatgccgcagtaggtgcctcaagagcagctgtagatgctggattt gtacctaatgacatgcaggtcggacaaacaggaaaaattgtagctccagatctgtacatagctgtaggtatttctggtgc tatccagcatttggcaggtatgaaggacagtaaagtgatagtagccatcaataaagatccagaggcaccaatcttccaag tcgccgactatggactagtggctgatctcttcaaggctgtgccagaaatgaccgatgctatgaacaaatga |
|
Protein
| Protein ID | pfu_aug1.0_21058.1_54728.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21058.1_54728.t1 NAIQTVKSKDSVKLITVRGTAFEAAQVEGGSGATEQAPTVDVKNELSEFVSQELTKSDRPELTSARTVVSGGRGMKNGDN FKLLYDLADKMNAAVGASRAAVDAGFVPNDMQVGQTGKIVAPDLYIAVGISGAIQHLAGMKDSKVIVAINKDPEAPIFQV ADYGLVADLFKAVPEMTDAMNK |
|