Gene
| Gene Model ID | pfu_aug1.0_2120.1_58778 |
|---|---|
| Locus | scaffold2120.1 : 29659 ... 38715 : - |
| To GenomeBrowser | scaffold2120.1:29659..38715 |
| Genes list of scaffold | scaffold2120.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2120.1_58778.t1 | 1 | 1 | I-set | 219 | 307 | 3.5e-22 | 78.0 | 2.5e-25 | 7.4e-22 | 77.0 |
| pfu_aug1.0_2120.1_58778.t1 | 1 | 1 | Ig_3 | 222 | 296 | 3.4e-07 | 30.6 | 3.5e-10 | 1.0e-06 | 29.1 |
| pfu_aug1.0_2120.1_58778.t1 | 1 | 1 | Ig_2 | 228 | 304 | 9.1e-09 | 35.3 | 9.7e-12 | 2.9e-08 | 33.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2120.1_58778.t1 | gi|116008190|ref|NP_444256.3| | myosin light chain kinase, smooth muscle isoform 3B [Homo sapiens] | 1.0e-15 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2120.1_58778.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2120.1_58778.t1 atggtccaccaaattgtatatatacctgtacagtttcgtgaaacagtggagcatctgaaagatccggacaaaagattcac aattgaaaacatcagatacaatgtttcgacaggaaatcatatttcaaagaagaaacctctcaaagaagaagctccaagtg aggaagacacaaagcccataccagaggatgaagttcaggcactacctgaagagagaccagatctattggagggtctggat atacaaccaatacaagtggctcccgaaaaaacggaggccacaccgatagagacgacaggaagtgacatcagcacttccga gacggaggatgtttctttcgagattgtgtccccggagtcgaccaaggtcaaggtcactccaaccgaggtcacaaccgaga ctgacttgactcttccagaggagaaagaagttcctctcacggcagcagttatggaggtctccgaggtcgttaccaaggag accaaacaggaaatacagcccgaggaagtggaggaagtaaaggaagtgactgcagaggaacaactgctcatgcccaaaga ggaacttcctgttttagagactgcaccagaggagataactccagaagtggaagaagaagaggaagagtctatacctatag aagaaggggaagcacctaaatttactcaaactttaaaagacatgaatgtagcggaaggaaaacctgtcaagtttatatgt accgtcacaggatatcctaaacctaaagttgtgtggatattagatgacgaagaaatcacagactttgacacttataagac cgaatacagagaagatggtgtttgtattctgagtattgagaaaaccttcaaggaagatgaaggagaattccagtgtaaag ctacaaaccagtttggctcagcaagcaccagtgcagacttggtactgactgtgcaaccagaatcacctcgatcattagag acagaggaagtaatgctaccagctccatcacagcttgaggaatcctctactgacatggtcattacccaggaagtcactct acaaggagagagatctccaacaagacctgataaggaggagatctccaacctgataaggaggagacctccaacaagacctg ataagaacacccacataaataagtctatggtgcagatatgtcatttaaaataa |
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Protein
| Protein ID | pfu_aug1.0_2120.1_58778.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2120.1_58778.t1 MVHQIVYIPVQFRETVEHLKDPDKRFTIENIRYNVSTGNHISKKKPLKEEAPSEEDTKPIPEDEVQALPEERPDLLEGLD IQPIQVAPEKTEATPIETTGSDISTSETEDVSFEIVSPESTKVKVTPTEVTTETDLTLPEEKEVPLTAAVMEVSEVVTKE TKQEIQPEEVEEVKEVTAEEQLLMPKEELPVLETAPEEITPEVEEEEEESIPIEEGEAPKFTQTLKDMNVAEGKPVKFIC TVTGYPKPKVVWILDDEEITDFDTYKTEYREDGVCILSIEKTFKEDEGEFQCKATNQFGSASTSADLVLTVQPESPRSLE TEEVMLPAPSQLEESSTDMVITQEVTLQGERSPTRPDKEEISNLIRRRPPTRPDKNTHINKSMVQICHLK |
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