Gene
| Gene Model ID | pfu_aug1.0_2122.1_44243 |
|---|---|
| Locus | scaffold2122.1 : 17486 ... 28004 : + |
| To GenomeBrowser | scaffold2122.1:17486..28004 |
| Genes list of scaffold | scaffold2122.1 |
| Synonym | pfu_aug2.0_150.1_00328 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2122.1_44243.t1 | 3 | 1 | Ldl_recept_a | 63 | 98 | 3.3e-10 | 39.6 | 1.5e-09 | 2.8e-06 | 27.0 |
| pfu_aug1.0_2122.1_44243.t1 | 3 | 2 | Ldl_recept_a | 103 | 121 | 3.3e-10 | 39.6 | 0.1 | 190.0 | 2.0 |
| pfu_aug1.0_2122.1_44243.t1 | 7 | 1 | LRR_8 | 123 | 139 | 4.6e-36 | 122.3 | 0.39 | 720.0 | 0.0 |
| pfu_aug1.0_2122.1_44243.t1 | 3 | 3 | Ldl_recept_a | 146 | 180 | 3.3e-10 | 39.6 | 5.0e-07 | 0.00092 | 19.0 |
| pfu_aug1.0_2122.1_44243.t1 | 7 | 2 | LRR_8 | 233 | 289 | 4.6e-36 | 122.3 | 5.0e-08 | 9.3e-05 | 22.1 |
| pfu_aug1.0_2122.1_44243.t1 | 8 | 1 | LRR_4 | 233 | 248 | 2.0e-24 | 84.6 | 0.011 | 21.0 | 4.8 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 1 | LRR_1 | 233 | 248 | 1.1e-16 | 58.2 | 0.21 | 400.0 | 1.7 |
| pfu_aug1.0_2122.1_44243.t1 | 7 | 3 | LRR_8 | 256 | 305 | 4.6e-36 | 122.3 | 3.6e-08 | 6.7e-05 | 22.5 |
| pfu_aug1.0_2122.1_44243.t1 | 8 | 2 | LRR_4 | 257 | 293 | 2.0e-24 | 84.6 | 1.1e-09 | 2.1e-06 | 27.1 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 2 | LRR_1 | 258 | 273 | 1.1e-16 | 58.2 | 0.0001 | 0.19 | 11.8 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 3 | LRR_1 | 278 | 294 | 1.1e-16 | 58.2 | 0.0028 | 5.1 | 7.5 |
| pfu_aug1.0_2122.1_44243.t1 | 8 | 3 | LRR_4 | 279 | 302 | 2.0e-24 | 84.6 | 0.0015 | 2.8 | 7.6 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 4 | LRR_1 | 299 | 312 | 1.1e-16 | 58.2 | 0.056 | 100.0 | 3.5 |
| pfu_aug1.0_2122.1_44243.t1 | 8 | 4 | LRR_4 | 347 | 384 | 2.0e-24 | 84.6 | 9.2e-08 | 0.00017 | 21.1 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 5 | LRR_1 | 348 | 365 | 1.1e-16 | 58.2 | 0.00027 | 0.51 | 10.5 |
| pfu_aug1.0_2122.1_44243.t1 | 7 | 4 | LRR_8 | 348 | 404 | 4.6e-36 | 122.3 | 4.9e-13 | 9.1e-10 | 38.1 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 6 | LRR_1 | 369 | 391 | 1.1e-16 | 58.2 | 0.038 | 71.0 | 4.0 |
| pfu_aug1.0_2122.1_44243.t1 | 8 | 5 | LRR_4 | 369 | 405 | 2.0e-24 | 84.6 | 4.5e-07 | 0.00083 | 18.9 |
| pfu_aug1.0_2122.1_44243.t1 | 7 | 5 | LRR_8 | 393 | 452 | 4.6e-36 | 122.3 | 2.4e-14 | 4.5e-11 | 42.3 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 7 | LRR_1 | 394 | 415 | 1.1e-16 | 58.2 | 7.8e-05 | 0.15 | 12.2 |
| pfu_aug1.0_2122.1_44243.t1 | 8 | 6 | LRR_4 | 394 | 429 | 2.0e-24 | 84.6 | 4.0e-05 | 0.074 | 12.7 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 8 | LRR_1 | 419 | 433 | 1.1e-16 | 58.2 | 0.0079 | 15.0 | 6.1 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 9 | LRR_1 | 441 | 462 | 1.1e-16 | 58.2 | 0.00019 | 0.36 | 11.0 |
| pfu_aug1.0_2122.1_44243.t1 | 7 | 6 | LRR_8 | 441 | 499 | 4.6e-36 | 122.3 | 1.9e-12 | 3.5e-09 | 36.2 |
| pfu_aug1.0_2122.1_44243.t1 | 8 | 7 | LRR_4 | 441 | 480 | 2.0e-24 | 84.6 | 1.9e-08 | 3.5e-05 | 23.3 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 10 | LRR_1 | 465 | 480 | 1.1e-16 | 58.2 | 0.012 | 22.0 | 5.6 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 11 | LRR_1 | 488 | 509 | 1.1e-16 | 58.2 | 3.5e-05 | 0.065 | 13.2 |
| pfu_aug1.0_2122.1_44243.t1 | 7 | 7 | LRR_8 | 488 | 542 | 4.6e-36 | 122.3 | 1.1e-11 | 2.0e-08 | 33.8 |
| pfu_aug1.0_2122.1_44243.t1 | 8 | 8 | LRR_4 | 488 | 521 | 2.0e-24 | 84.6 | 2.5e-08 | 4.6e-05 | 22.9 |
| pfu_aug1.0_2122.1_44243.t1 | 12 | 12 | LRR_1 | 512 | 521 | 1.1e-16 | 58.2 | 0.016 | 31.0 | 5.1 |
| pfu_aug1.0_2122.1_44243.t1 | 1 | 1 | 7tm_1 | 592 | 853 | 1.5e-30 | 106.1 | 1.2e-33 | 2.3e-30 | 105.6 |
Transcript
| Transcript ID | pfu_aug1.0_2122.1_44243.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2122.1_44243.t1 atgtcggcaaaggatgtcaactgcgaatttcagaaagatttctgtggctacacgatattggatcgtgcaaacaatgtgga tgtgctaaatgaacattacgtatgggaagatatgggaatcgtcgcaatcaacgtgtccaagccaatgaagcaaaggaaac tgctaatggccaagaagctaatcgacgaatgtacagatgatgaatttaaatgtgatgacttgacttgtatcccattggta gatacgtgtgacgggtacggtgactgccctgataactcagatgaactcttctgtaggcaatatctgaaatgcggagatga agaaatctactgcgagtatgccaatcgatgtgtccctcagtacaaagatttaattcaaaatctcactgatatatgtcaca ctacgtttttccattttaaaacaccatcgctttgtccaaatgactttacatgcaaaggatataacaacaactgcctatca acaaacgaagtttgtgatggcaaaccccagtgtgtccatggtgatgatgaaattggatgcgtcaaaaattgcccgcgtgg ctgcacgtgccggggattgagtttcgaatcgtgtccttctgattcacttcctgatatacctttgatcgcagctcatattg atttgtctggcaaggatgtgaacatgagtctgctgtgtctggggtataggaccttacttgtcaaattaaacttgtcaaac actggaatagacgatgttacatgcctctctacaaatttgatgtttccagctttgcgtatacttgacttgtccttcaacaa tatcacaactttacacaagttacaattgccaagcttggagaaattatacttggatcataatccaatccaacgtattgaat caaaattgagctttacgtcgctttccctctccaattgtgacttgaaccatctagaatgggaaaacgccggttccatcagt aatggtatactatccgctgctcataccagcaatcagagcgagatatacccatttctatattatatgaacaacttgtgcta tctaaggaaactcgatcttagctccaatagactttcccatttcggatattttggagaatgtcagtcattagtttcattgg atctctccttaaataccatttcatccctctcatttcattcgtttaatggacttacgctcttagagcgccttgatcttagt cacaataagttgcaattgatctcgagggagtattttcaagaattgtacgaggttaaattattgaatctcagcaacaacaa aattacattcatcaatgagaagtcttttatagatttatggagcttgataagattagatctgagccgaaacaacataaaga aattagatttcggcatttttgaaaatcagaacaatcttctttatttatatttagagaacaacggactttcaaagataagc aggaccagagcctctctcgagtctttacagctcttgaatctcagaggaaacagcattgtccacataccatacgggttctt tgaaacccttaacaatcttaaaactcttgatataagtggtaaccttgttattcctcaaaagaccacgttcaatggtcttg gcgttctacgatatatgaatgtagatagttttgttttatgctgcattcgaccagtaagtgtagaagaatcaaactgcaaa tctccgaacgacattttttcttcgtgtgccaatttgatagattttggtattctccatgtgtgtatctggtttacggctgc actttccttgattggaaatatgtttgccctgatagcaaggattcgaaaaggcacgtggattcatgagtcacgtgacgtgc ttgtgaccaacctctgtatctccgactttttgatgggcatataccttatcatagtggcatacatggatgttcagacacga ggtcaatatggcctacatcataacgaatggaaacgtagcgttctatgtaaaatagcaggtgtgctcgtttctgtttccag tgaggcttctacgctctgtattttggctataacgatggacagatacatacttttcaggaacccattgtcgctcagaaaac agtccctgaagtctgcctatataacagtggcgctgatttggatcctctctatattagtggccacccttccattttcctgg aggcagaatgaggacgataatttctacggtcgcagcagtgtttgtatatcacttcccttgaccaagagaacattgacctt taaaggatgggagtattccttcgctgtctttattggactcaatttgtttatatatcttggagttgtcataggtcagatag ttatctataaacagattctggcttataacacatgcgtgaagtcggacaagaaaaaacaaagggaaatcgccgtggccaag tctttgtcagcagttgtcatcagcgatacattgtgctggttaccgattgccattataggttgcatggccattggaggagt tgacatctcaaatgacgtttacgcgtggataatagtgttcgtactgccgcttaattctgccattaatcctttcctgtaca cactgacttcttaccggaaacaacagaaaaatcaactcagaatttccaaatcgcgttggtacgaccgctacggatacctg tatctggtctccagagtgatgactctagaggaggaatga |
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Protein
| Protein ID | pfu_aug1.0_2122.1_44243.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2122.1_44243.t1 MSAKDVNCEFQKDFCGYTILDRANNVDVLNEHYVWEDMGIVAINVSKPMKQRKLLMAKKLIDECTDDEFKCDDLTCIPLV DTCDGYGDCPDNSDELFCRQYLKCGDEEIYCEYANRCVPQYKDLIQNLTDICHTTFFHFKTPSLCPNDFTCKGYNNNCLS TNEVCDGKPQCVHGDDEIGCVKNCPRGCTCRGLSFESCPSDSLPDIPLIAAHIDLSGKDVNMSLLCLGYRTLLVKLNLSN TGIDDVTCLSTNLMFPALRILDLSFNNITTLHKLQLPSLEKLYLDHNPIQRIESKLSFTSLSLSNCDLNHLEWENAGSIS NGILSAAHTSNQSEIYPFLYYMNNLCYLRKLDLSSNRLSHFGYFGECQSLVSLDLSLNTISSLSFHSFNGLTLLERLDLS HNKLQLISREYFQELYEVKLLNLSNNKITFINEKSFIDLWSLIRLDLSRNNIKKLDFGIFENQNNLLYLYLENNGLSKIS RTRASLESLQLLNLRGNSIVHIPYGFFETLNNLKTLDISGNLVIPQKTTFNGLGVLRYMNVDSFVLCCIRPVSVEESNCK SPNDIFSSCANLIDFGILHVCIWFTAALSLIGNMFALIARIRKGTWIHESRDVLVTNLCISDFLMGIYLIIVAYMDVQTR GQYGLHHNEWKRSVLCKIAGVLVSVSSEASTLCILAITMDRYILFRNPLSLRKQSLKSAYITVALIWILSILVATLPFSW RQNEDDNFYGRSSVCISLPLTKRTLTFKGWEYSFAVFIGLNLFIYLGVVIGQIVIYKQILAYNTCVKSDKKKQREIAVAK SLSAVVISDTLCWLPIAIIGCMAIGGVDISNDVYAWIIVFVLPLNSAINPFLYTLTSYRKQQKNQLRISKSRWYDRYGYL YLVSRVMTLEEE |
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