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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_21312.1_40284
Locus scaffold21312.1 : 1 ... 25580 : +
To GenomeBrowser scaffold21312.1:1..25580
Genes list of scaffold scaffold21312.1
Synonym pfu_aug2.0_1190.1_01461

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_21312.1_40284.t1 4 1 TPR_MLP1_2 8 118 1.6e-12 47.2 0.0027 40.0 3.9
pfu_aug1.0_21312.1_40284.t1 4 2 TPR_MLP1_2 109 206 1.6e-12 47.2 1.1e-16 1.6e-12 47.2
pfu_aug1.0_21312.1_40284.t1 4 3 TPR_MLP1_2 223 328 1.6e-12 47.2 0.0014 21.0 4.8
pfu_aug1.0_21312.1_40284.t1 4 4 TPR_MLP1_2 455 489 1.6e-12 47.2 0.22 3300.0 -2.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_21312.1_40284.t1 gi|149058426|gb|EDM09583.1| translocated promoter region [Rattus norvegicus] 2.0e-23

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 3
>Adult tissues
pearlSac 1

Transcript
Transcript IDpfu_aug1.0_21312.1_40284.t1
Definition-
>pfu_aug1.0_21312.1_40284.t1
attccagtatgtatgttgacaaagaagaagtaaagaaccttaaaactgagctagaagattccagacgggaagtccacaat
ttgacagagcagcttactcagtgtagacaacataaacaggaatatatggagctagccaacaacttacagggggcaataga
taacgaggcggaaatgacgaagaacgcacaggccagactacaggccgcggaggaggaccaagactcgatgagatcaagta
tgcagatactggagaaacataaacaacaaatacaggaggaaaataagaaagaaagcgaggaaaatcacaaaatgattgct
gacctgagaagagaacgatctaagattcaaggagaattacaggaggcaattcagaatctgtctgaggccaactcacaggc
gtcagcagcacgtgaagattgtagtcggcagtctcagctagcagcagaggcacaggataaataccagagagaacttatgc
ttcatgccgcagatgtagaggccttgacaacagtcaagaaacagctgaagaagattggtagaaagtacaaagagcaggca
gagacatgtggtaaggagttggaggagaccaaacaacagctagagagtgccaaggagactaaggaagacccggcacaaaa
tacagctgtgatagaacgacacacggcaccaatcagggaagagctggaggctgcagagaaagagagagaccaagccaaac
aacaactggaaaaacaaacagaggagtggaataaaacaaaggaacaagtcacacagctagaacagaatatcagcaactta
agtgcagaaattttgaaactgaagggagaaaaagaggattacgagaagaaacaaaatcagtcacgatctgtactacaggc
tgcaaagaaaaaaatagcatcacaaacagaagaaaacgaaaaactaactaaagaaaagacagaacttaatgagagattga
attcaagcacacagcaaatcaatgatcaaccaattgttatagaagtagagagctcaaatcaacatgaagtcacctctgag
cccccatctggtgttagtagtaccgtaaccacagtaacaggagaggagtctcaagcggctgtaccatccatcactgtcac
agacgagcacgctaacactacggccgtaccacaagacggagagaaaatggaggaggacactgagactccagaggtagtga
ccgtatcagagagtgatacctcacaagctgtgtcagctagagaatctcaggtaataagtgacagcatacctgaggaatcg
acacctgtcgtaacagaggagccttcccaggattccaatgccattataatcctagagagtgatgaagaggagtatggtga
ggaagagccggaggaggaggaggaaggtgatgaggaggattatgaagaagtcggtgatgatgaagatgatgatcaagagg
actatgaagaggtacatggacataataatgtaaaaattaaatcttcactccccactatcataaaccatcttgtatcactc
ctcactatcataaaaccatcctacgagatctctccccatgtgtctaatcagagatttacatttggcagcctagcggatca
ggcacaaagtcaatcagagcttgctcagctagcatctcaaggagctctaggtatggatgatacacgtatggatctatcac
agttagaggaggggacaggtagaagtgtacccagcacccccctccattcctccgccccaacgtctatcattactgagggt
actgtggaatctaagctagcagccagaccggatgatgcccttactgaggccactcccagtacgtctgagggggagacgca
gggggaaacagaacctcagtcggaaaggccagaggagggtgtagaggtagaggaggagcttgtaggggtagaggagttag
aggacactatggattcagggaataaagttgatagtgctacagctgaaaaagacgaggatggcgaggattcgacaccacaa
ccagaaaagtcagaacagagtgagaagcctaagatccagcctatagtgtgggagtcgtcatcctccagtagtccctcctc
ttctgtacaaccctcccagtcattccgaggacgtcagactgccatacgaggatcaggaatccctcagcgaggaatgaggc
agcaccgaggaggattccagagaatgaggagtcctgtaccaaggcagcgaggagccagaggaggaaggggaggaggcatg
tataggcctccaatgttctaa

Protein
Protein IDpfu_aug1.0_21312.1_40284.t1
Definition-
>pfu_aug1.0_21312.1_40284.t1
SSMYVDKEEVKNLKTELEDSRREVHNLTEQLTQCRQHKQEYMELANNLQGAIDNEAEMTKNAQARLQAAEEDQDSMRSSM
QILEKHKQQIQEENKKESEENHKMIADLRRERSKIQGELQEAIQNLSEANSQASAAREDCSRQSQLAAEAQDKYQRELML
HAADVEALTTVKKQLKKIGRKYKEQAETCGKELEETKQQLESAKETKEDPAQNTAVIERHTAPIREELEAAEKERDQAKQ
QLEKQTEEWNKTKEQVTQLEQNISNLSAEILKLKGEKEDYEKKQNQSRSVLQAAKKKIASQTEENEKLTKEKTELNERLN
SSTQQINDQPIVIEVESSNQHEVTSEPPSGVSSTVTTVTGEESQAAVPSITVTDEHANTTAVPQDGEKMEEDTETPEVVT
VSESDTSQAVSARESQVISDSIPEESTPVVTEEPSQDSNAIIILESDEEEYGEEEPEEEEEGDEEDYEEVGDDEDDDQED
YEEVHGHNNVKIKSSLPTIINHLVSLLTIIKPSYEISPHVSNQRFTFGSLADQAQSQSELAQLASQGALGMDDTRMDLSQ
LEEGTGRSVPSTPLHSSAPTSIITEGTVESKLAARPDDALTEATPSTSEGETQGETEPQSERPEEGVEVEEELVGVEELE
DTMDSGNKVDSATAEKDEDGEDSTPQPEKSEQSEKPKIQPIVWESSSSSSPSSSVQPSQSFRGRQTAIRGSGIPQRGMRQ
HRGGFQRMRSPVPRQRGARGGRGGGMYRPPMF

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