Gene
| Gene Model ID | pfu_aug1.0_21312.1_40284 |
|---|---|
| Locus | scaffold21312.1 : 1 ... 25580 : + |
| To GenomeBrowser | scaffold21312.1:1..25580 |
| Genes list of scaffold | scaffold21312.1 |
| Synonym | pfu_aug2.0_1190.1_01461 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_21312.1_40284.t1 | 4 | 1 | TPR_MLP1_2 | 8 | 118 | 1.6e-12 | 47.2 | 0.0027 | 40.0 | 3.9 |
| pfu_aug1.0_21312.1_40284.t1 | 4 | 2 | TPR_MLP1_2 | 109 | 206 | 1.6e-12 | 47.2 | 1.1e-16 | 1.6e-12 | 47.2 |
| pfu_aug1.0_21312.1_40284.t1 | 4 | 3 | TPR_MLP1_2 | 223 | 328 | 1.6e-12 | 47.2 | 0.0014 | 21.0 | 4.8 |
| pfu_aug1.0_21312.1_40284.t1 | 4 | 4 | TPR_MLP1_2 | 455 | 489 | 1.6e-12 | 47.2 | 0.22 | 3300.0 | -2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_21312.1_40284.t1 | gi|149058426|gb|EDM09583.1| | translocated promoter region [Rattus norvegicus] | 2.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_21312.1_40284.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21312.1_40284.t1 attccagtatgtatgttgacaaagaagaagtaaagaaccttaaaactgagctagaagattccagacgggaagtccacaat ttgacagagcagcttactcagtgtagacaacataaacaggaatatatggagctagccaacaacttacagggggcaataga taacgaggcggaaatgacgaagaacgcacaggccagactacaggccgcggaggaggaccaagactcgatgagatcaagta tgcagatactggagaaacataaacaacaaatacaggaggaaaataagaaagaaagcgaggaaaatcacaaaatgattgct gacctgagaagagaacgatctaagattcaaggagaattacaggaggcaattcagaatctgtctgaggccaactcacaggc gtcagcagcacgtgaagattgtagtcggcagtctcagctagcagcagaggcacaggataaataccagagagaacttatgc ttcatgccgcagatgtagaggccttgacaacagtcaagaaacagctgaagaagattggtagaaagtacaaagagcaggca gagacatgtggtaaggagttggaggagaccaaacaacagctagagagtgccaaggagactaaggaagacccggcacaaaa tacagctgtgatagaacgacacacggcaccaatcagggaagagctggaggctgcagagaaagagagagaccaagccaaac aacaactggaaaaacaaacagaggagtggaataaaacaaaggaacaagtcacacagctagaacagaatatcagcaactta agtgcagaaattttgaaactgaagggagaaaaagaggattacgagaagaaacaaaatcagtcacgatctgtactacaggc tgcaaagaaaaaaatagcatcacaaacagaagaaaacgaaaaactaactaaagaaaagacagaacttaatgagagattga attcaagcacacagcaaatcaatgatcaaccaattgttatagaagtagagagctcaaatcaacatgaagtcacctctgag cccccatctggtgttagtagtaccgtaaccacagtaacaggagaggagtctcaagcggctgtaccatccatcactgtcac agacgagcacgctaacactacggccgtaccacaagacggagagaaaatggaggaggacactgagactccagaggtagtga ccgtatcagagagtgatacctcacaagctgtgtcagctagagaatctcaggtaataagtgacagcatacctgaggaatcg acacctgtcgtaacagaggagccttcccaggattccaatgccattataatcctagagagtgatgaagaggagtatggtga ggaagagccggaggaggaggaggaaggtgatgaggaggattatgaagaagtcggtgatgatgaagatgatgatcaagagg actatgaagaggtacatggacataataatgtaaaaattaaatcttcactccccactatcataaaccatcttgtatcactc ctcactatcataaaaccatcctacgagatctctccccatgtgtctaatcagagatttacatttggcagcctagcggatca ggcacaaagtcaatcagagcttgctcagctagcatctcaaggagctctaggtatggatgatacacgtatggatctatcac agttagaggaggggacaggtagaagtgtacccagcacccccctccattcctccgccccaacgtctatcattactgagggt actgtggaatctaagctagcagccagaccggatgatgcccttactgaggccactcccagtacgtctgagggggagacgca gggggaaacagaacctcagtcggaaaggccagaggagggtgtagaggtagaggaggagcttgtaggggtagaggagttag aggacactatggattcagggaataaagttgatagtgctacagctgaaaaagacgaggatggcgaggattcgacaccacaa ccagaaaagtcagaacagagtgagaagcctaagatccagcctatagtgtgggagtcgtcatcctccagtagtccctcctc ttctgtacaaccctcccagtcattccgaggacgtcagactgccatacgaggatcaggaatccctcagcgaggaatgaggc agcaccgaggaggattccagagaatgaggagtcctgtaccaaggcagcgaggagccagaggaggaaggggaggaggcatg tataggcctccaatgttctaa |
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Protein
| Protein ID | pfu_aug1.0_21312.1_40284.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21312.1_40284.t1 SSMYVDKEEVKNLKTELEDSRREVHNLTEQLTQCRQHKQEYMELANNLQGAIDNEAEMTKNAQARLQAAEEDQDSMRSSM QILEKHKQQIQEENKKESEENHKMIADLRRERSKIQGELQEAIQNLSEANSQASAAREDCSRQSQLAAEAQDKYQRELML HAADVEALTTVKKQLKKIGRKYKEQAETCGKELEETKQQLESAKETKEDPAQNTAVIERHTAPIREELEAAEKERDQAKQ QLEKQTEEWNKTKEQVTQLEQNISNLSAEILKLKGEKEDYEKKQNQSRSVLQAAKKKIASQTEENEKLTKEKTELNERLN SSTQQINDQPIVIEVESSNQHEVTSEPPSGVSSTVTTVTGEESQAAVPSITVTDEHANTTAVPQDGEKMEEDTETPEVVT VSESDTSQAVSARESQVISDSIPEESTPVVTEEPSQDSNAIIILESDEEEYGEEEPEEEEEGDEEDYEEVGDDEDDDQED YEEVHGHNNVKIKSSLPTIINHLVSLLTIIKPSYEISPHVSNQRFTFGSLADQAQSQSELAQLASQGALGMDDTRMDLSQ LEEGTGRSVPSTPLHSSAPTSIITEGTVESKLAARPDDALTEATPSTSEGETQGETEPQSERPEEGVEVEEELVGVEELE DTMDSGNKVDSATAEKDEDGEDSTPQPEKSEQSEKPKIQPIVWESSSSSSPSSSVQPSQSFRGRQTAIRGSGIPQRGMRQ HRGGFQRMRSPVPRQRGARGGRGGGMYRPPMF |
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