Gene
| Gene Model ID | pfu_aug1.0_2134.1_66205 |
|---|---|
| Locus | scaffold2134.1 : 17909 ... 26915 : - |
| To GenomeBrowser | scaffold2134.1:17909..26915 |
| Genes list of scaffold | scaffold2134.1 |
| Synonym | pfu_aug2.0_12.1_06724 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2134.1_66205.t1 | 5 | 1 | WD40 | 2 | 31 | 6.1e-24 | 82.9 | 7.4e-09 | 1.1e-05 | 25.1 |
| pfu_aug1.0_2134.1_66205.t1 | 3 | 1 | Nucleoporin_N | 14 | 78 | 4.1e-06 | 25.8 | 0.0037 | 5.5 | 5.6 |
| pfu_aug1.0_2134.1_66205.t1 | 5 | 2 | WD40 | 43 | 77 | 6.1e-24 | 82.9 | 1.3e-07 | 0.00019 | 21.2 |
| pfu_aug1.0_2134.1_66205.t1 | 5 | 3 | WD40 | 89 | 115 | 6.1e-24 | 82.9 | 0.0065 | 9.7 | 6.2 |
| pfu_aug1.0_2134.1_66205.t1 | 3 | 2 | Nucleoporin_N | 89 | 127 | 4.1e-06 | 25.8 | 3.0e-05 | 0.045 | 12.4 |
| pfu_aug1.0_2134.1_66205.t1 | 5 | 4 | WD40 | 186 | 194 | 6.1e-24 | 82.9 | 0.25 | 370.0 | 1.2 |
| pfu_aug1.0_2134.1_66205.t1 | 3 | 3 | Nucleoporin_N | 205 | 267 | 4.1e-06 | 25.8 | 0.0066 | 9.7 | 4.8 |
| pfu_aug1.0_2134.1_66205.t1 | 5 | 5 | WD40 | 212 | 240 | 6.1e-24 | 82.9 | 2.5e-08 | 3.7e-05 | 23.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2134.1_66205.t1 | gi|241788746|ref|XP_002414463.1| | WD-repeat protein, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2134.1_66205.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2134.1_66205.t1 atgacccttaatcatcataagaaagcatgccgagcgataagattctccggggatgggaaccagttgtacacggcatctaa agataaatccatacagactgtagatcttaacactggagctgtgaaaactaaaatatccaaggcacatagtgcaccaatat acagtctactagaaacaggagataactttgtggcgacaggtgatgatgatggccatcttaaggtgtgggatatgagaacc aattcagctatcatggaaatgaaagaaagtgaagagttcatcagtgatatggcaatagatgaccaaaggaaaattctcct ggcaacaagtggtgacggaacactgacagcgttcaacatcaggaagaaaagaatggaattacagtctgagctatttgact cagaattcctatctctttcattggtcaagcacaagcagaaagtcatatgtggaagtggcgagggagtcctcaacatcttt aattggggagagtggggcaatataagtgacagattccctgactgtatgatacctatcactgacagcattgagtgtacagg atctagtgatggtatagtcagggctgtgaacatattaccgaacaggtttttaggtgttgtcggcgaacatgaagattttc ccgttgagaacctgagcttgtcacatgaccatctatatatagccagctgttcacatgatcagacaatcaaattctggaac atagaagaaataaaagacgaaaaagtgaatacaaaaaagaaggctaagaggactaacaaacctaaagcgtttaaatcggc agcaaaggaaaatttctttgctggattggcagaggaaggggagtccagtaaaacagaatctaaagatggcgacgatgagg aggaggaggaggacagtgatgataatgacgatgatagtgattcagacaatgatgatgataatgattaa |
|
Protein
| Protein ID | pfu_aug1.0_2134.1_66205.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2134.1_66205.t1 MTLNHHKKACRAIRFSGDGNQLYTASKDKSIQTVDLNTGAVKTKISKAHSAPIYSLLETGDNFVATGDDDGHLKVWDMRT NSAIMEMKESEEFISDMAIDDQRKILLATSGDGTLTAFNIRKKRMELQSELFDSEFLSLSLVKHKQKVICGSGEGVLNIF NWGEWGNISDRFPDCMIPITDSIECTGSSDGIVRAVNILPNRFLGVVGEHEDFPVENLSLSHDHLYIASCSHDQTIKFWN IEEIKDEKVNTKKKAKRTNKPKAFKSAAKENFFAGLAEEGESSKTESKDGDDEEEEEDSDDNDDDSDSDNDDDND |
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