Gene
| Gene Model ID | pfu_aug1.0_2148.1_51543 |
|---|---|
| Locus | scaffold2148.1 : 16246 ... 34516 : + |
| To GenomeBrowser | scaffold2148.1:16246..34516 |
| Genes list of scaffold | scaffold2148.1 |
| Synonym | pfu_aug2.0_1946.1_21863 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2148.1_51543.t1 | 1 | 1 | FWWh | 30 | 189 | 3.4e-40 | 137.1 | 2.00386e-43 | 7.29999e-40 | 136.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2148.1_51543.t1 | gi|260821986|ref|XP_002606384.1| | hypothetical protein BRAFLDRAFT_118523 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 3 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2148.1_51543.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2148.1_51543.t1 atgctggaggatttggagactagattagataaactagaggataaacttaggttttatgctagtcaaatcatcacagaaga aaaaccagaggaaagagaagaagttattccttttggagtaaataaagcatttatcacccaactgatggagtctgacctag gcaagtctcagagtacggggcgaggcaggaagatgttgcctggatttagaaaattttggaaaaagttatttctatcagaa gcctcagttgccgttatgcaggacacattttggtggtttttccttagttcctttgacaaatccaaagtggatgagatgaa tgagctgtatgacaggatagcagatagtttcacggcattgttcactagtactcataaagatgtcaaggacaagttcttat cagtatatcctgattgtctggcccaggcaatttacatggcttactgggaggcattcccagaatccagaggaaaaatggat gaaacttttaaacaaaaccttattaattgtgtgtcagagtgggtgactggtcttaagcctgtaccagggacctggaagtc ttggaatgttcagaagatggaggccaaggcacttaaaggcttagagagagagggtagtcaggctgccaataaactaatgc aggcagcagtccttaataaagacatggaggtcaaggtaattaattgtcacagagcttctgtacgtctctcaatctttgat ctcaatcaggaatgctatagggtgcaacaaatagccctaaaacctcctcaagagtctcatcaagttggaccgggaccaga atatgagcgagtactgtttaacaccagtggtcgaagtcctcttatatcacattacttacacatgagaagactgcgagact ttaaacaaccaggaaagaaagtccgtagaacagaaatagcagcacttcctgctccaggtcctacatacaaacaactgata gaaaataaaaagatcctctcagagtcactcaaaaaggaatatgaaaagatttgtgaacaaacacagaaagacataatgga gatagagaggaagagaattgaaacaaaccgtgagataaataatataaccaaggaactcatgatgacccgtaatcctctag atctcaaaatactcagcgagagaattattgccataagggagagggaccgggagatagcacttctggacaaggactcagat aaaccaatcggatctgacgaccaggatgaagacgactactaa |
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Protein
| Protein ID | pfu_aug1.0_2148.1_51543.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2148.1_51543.t1 MLEDLETRLDKLEDKLRFYASQIITEEKPEEREEVIPFGVNKAFITQLMESDLGKSQSTGRGRKMLPGFRKFWKKLFLSE ASVAVMQDTFWWFFLSSFDKSKVDEMNELYDRIADSFTALFTSTHKDVKDKFLSVYPDCLAQAIYMAYWEAFPESRGKMD ETFKQNLINCVSEWVTGLKPVPGTWKSWNVQKMEAKALKGLEREGSQAANKLMQAAVLNKDMEVKVINCHRASVRLSIFD LNQECYRVQQIALKPPQESHQVGPGPEYERVLFNTSGRSPLISHYLHMRRLRDFKQPGKKVRRTEIAALPAPGPTYKQLI ENKKILSESLKKEYEKICEQTQKDIMEIERKRIETNREINNITKELMMTRNPLDLKILSERIIAIRERDREIALLDKDSD KPIGSDDQDEDDY |
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