Gene
| Gene Model ID | pfu_aug1.0_2150.1_22880 |
|---|---|
| Locus | scaffold2150.1 : 4007 ... 17045 : - |
| To GenomeBrowser | scaffold2150.1:4007..17045 |
| Genes list of scaffold | scaffold2150.1 |
| Synonym | pfu_aug2.0_1263.1_11558 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2150.1_22880.t1 | 3 | 1 | WD40 | 152 | 175 | 4.1e-14 | 51.8 | 9.5e-05 | 0.47 | 10.4 |
| pfu_aug1.0_2150.1_22880.t1 | 3 | 2 | WD40 | 198 | 229 | 4.1e-14 | 51.8 | 4.3e-08 | 0.00021 | 21.0 |
| pfu_aug1.0_2150.1_22880.t1 | 3 | 3 | WD40 | 281 | 308 | 4.1e-14 | 51.8 | 5.5e-07 | 0.0027 | 17.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2150.1_22880.t1 | gi|115678853|ref|XP_795417.2| | PREDICTED: F-box/WD repeat-containing protein 9 [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2150.1_22880.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2150.1_22880.t1 atggcagaagcctcgtccaacaccaattcatcaaaatctgatggaaaaggtacaagatcaagttatcctccccgtgactc tctatcccaggatgaataccaggatgtcccagaacctaacaacacagaggaagattatgaggaggatgaccccctgacct tagacaccctccctgtagaactactgatgtatatatctaacttcttagatgccaagtttctaattcatacactgagtaag gtctgccaagtgttccatgatctactaaccagagatatctactggaagaccaggatcagtaaaagatggccaaaaccata tcctcctgtatacgatgagaaattcagttggcaggaggcatgtataatgagagaggaacaacacaaaatgtggaccaacc aggaggagttatgtcatcatttgaagtacagagagggaatatttgctcctgttgatgctgtacatctgatgaagaatggt agatttttggtgtcaggatcccgggaccgttacttgaacgtagtggacctgtccaagtatgatccagagaattcatcttc cattaaacagatgaaagtctactcttatgataaagctcacaagggctggatatggtcggtggcctccaacagtgacgaca gtaggatgtgtacaggatcatgggatacctacattaaaacatgggatgtatggaacgattgtacagaaataaataattac aaatgtagatcagctgtgttgagtcttcacatggaagagaacaccgtgattggtgcaggttatgaccaacaaatctacac catcgacaccaggaccaatgacgtacacaggaagaagtaccatagacggcctgtgctaagtctgaaagccgatgataagt acgtaatcagtggtagtgaagacaagacggtgtctatatttgacagacgggcaggccatgtttacaaaactatacagcac ttcttgatttatatatccatagaagattaa |
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Protein
| Protein ID | pfu_aug1.0_2150.1_22880.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2150.1_22880.t1 MAEASSNTNSSKSDGKGTRSSYPPRDSLSQDEYQDVPEPNNTEEDYEEDDPLTLDTLPVELLMYISNFLDAKFLIHTLSK VCQVFHDLLTRDIYWKTRISKRWPKPYPPVYDEKFSWQEACIMREEQHKMWTNQEELCHHLKYREGIFAPVDAVHLMKNG RFLVSGSRDRYLNVVDLSKYDPENSSSIKQMKVYSYDKAHKGWIWSVASNSDDSRMCTGSWDTYIKTWDVWNDCTEINNY KCRSAVLSLHMEENTVIGAGYDQQIYTIDTRTNDVHRKKYHRRPVLSLKADDKYVISGSEDKTVSIFDRRAGHVYKTIQH FLIYISIED |
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