Gene
| Gene Model ID | pfu_aug1.0_2151.1_30002 |
|---|---|
| Locus | scaffold2151.1 : 3076 ... 18209 : + |
| To GenomeBrowser | scaffold2151.1:3076..18209 |
| Genes list of scaffold | scaffold2151.1 |
| Synonym | pfu_aug2.0_12160.1_03117 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2151.1_30002.t1 | 3 | 1 | zf-C2H2_2 | 55 | 99 | 2.1e-29 | 101.6 | 0.0016 | 2.4 | 8.3 |
| pfu_aug1.0_2151.1_30002.t1 | 3 | 2 | zf-C2H2_2 | 155 | 247 | 2.1e-29 | 101.6 | 1.5e-28 | 2.2e-25 | 88.6 |
| pfu_aug1.0_2151.1_30002.t1 | 3 | 1 | zf-BED | 155 | 165 | 2.7e-06 | 27.0 | 0.048 | 71.0 | 3.2 |
| pfu_aug1.0_2151.1_30002.t1 | 3 | 2 | zf-BED | 203 | 228 | 2.7e-06 | 27.0 | 4.6e-06 | 0.0068 | 16.1 |
| pfu_aug1.0_2151.1_30002.t1 | 1 | 1 | zf-C2H2_jaz | 206 | 229 | 4.8e-06 | 26.5 | 3.3e-09 | 4.8e-06 | 26.5 |
| pfu_aug1.0_2151.1_30002.t1 | 3 | 3 | zf-BED | 284 | 309 | 2.7e-06 | 27.0 | 0.00076 | 1.1 | 9.0 |
| pfu_aug1.0_2151.1_30002.t1 | 3 | 3 | zf-C2H2_2 | 285 | 309 | 2.1e-29 | 101.6 | 0.00019 | 0.28 | 11.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2151.1_30002.t1 | gi|291244497|ref|XP_002742133.1| | PREDICTED: zinc finger protein 277-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2151.1_30002.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2151.1_30002.t1 atgccacgttctcactacgttcatgaaaaatttcaaggacttcaaggacgtagtaagaacgtctcgagagaacgtgtaag tttgcctatgaggctacgacaagacctttcaatttatgctatagcagttaacctagtgactttggccttggtctttaacc tagttaaagattttgctatggagcacaaatttgtggtagctgatgtcaacttgattgcagatttgaaaaaatactgtaca tattggaagcaaagactgaaagaggaacccatcaagatgttctgttctgtgatctgtactaacatgggaccggaagatga aggagataaagaaaactactacctactgagcaatgtactggaggaggacaagaagattagagaatttttacagaagaaga aactggagtctgttttatccagtcagcaagctgaaagggaggacctgactttctgtagaggctgtttattctgtagggaa caatttagtggtaaaaggtctgtctactttgaccatctgtcccaggatcatagcttcaatattggacatcctgataactt agtatacacagacgaactacttgataaattacagtcaaagctagacaatttacaatgcttgtattgtgagaagacattta aggacaggacagttctcaaggaacacatgaggaagaaacaacataaacgtatcaatcctaaaaatagatcttacgataaa tactacgtcataaactacttggaaatgggaaagaactgggaggtgatacaatcagaacatgacatagcatatgatacaga gggtaacacagacgcggaggatgagtgggaaggctgggaggagtctggtagtcaggctgtctgtctgttctgtgaatttg catctggtaatgctgaaagacttaatagtcatatgcagtgccgtcataatgaaaaacaacgccaaaagatgttgactcgg acattttgtgctttctaa |
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Protein
| Protein ID | pfu_aug1.0_2151.1_30002.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2151.1_30002.t1 MPRSHYVHEKFQGLQGRSKNVSRERVSLPMRLRQDLSIYAIAVNLVTLALVFNLVKDFAMEHKFVVADVNLIADLKKYCT YWKQRLKEEPIKMFCSVICTNMGPEDEGDKENYYLLSNVLEEDKKIREFLQKKKLESVLSSQQAEREDLTFCRGCLFCRE QFSGKRSVYFDHLSQDHSFNIGHPDNLVYTDELLDKLQSKLDNLQCLYCEKTFKDRTVLKEHMRKKQHKRINPKNRSYDK YYVINYLEMGKNWEVIQSEHDIAYDTEGNTDAEDEWEGWEESGSQAVCLFCEFASGNAERLNSHMQCRHNEKQRQKMLTR TFCAF |
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