Gene
Gene Model ID | pfu_aug1.0_21769.1_11410 |
---|---|
Locus | scaffold21769.1 : 1 ... 11492 : + |
To GenomeBrowser | scaffold21769.1:1..11492 |
Genes list of scaffold | scaffold21769.1 |
Synonym | pfu_aug2.0_8110.1_02952 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_21769.1_11410.t1 | 2 | 1 | TMC | 94 | 159 | 6.7e-20 | 71.5 | 9.0e-24 | 6.7e-20 | 71.5 |
pfu_aug1.0_21769.1_11410.t1 | 2 | 2 | TMC | 237 | 254 | 6.7e-20 | 71.5 | 0.15 | 1100.0 | -0.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_21769.1_11410.t1 | gi|260800851|ref|XP_002595310.1| | hypothetical protein BRAFLDRAFT_87540 [Branchiostoma floridae] | 6.0e-36 |
Transcript
Transcript ID | pfu_aug1.0_21769.1_11410.t1 |
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Definition | - |
>pfu_aug1.0_21769.1_11410.t1 tttcaatgcccccaaggaaatagctaaaacccaggatcggaaacatggagaagataaaatcacattcaaagaaagaatct tggatggaattaaagaatcgactttaccgatgaaagaaaagcttaaagtacacagaatgcaggtacggtaccggaagagc aagcacacggagcagggggatgactacccgtttacatggagcatgttctgtctgtgggatcattctatatacaccagaag cggagtcaaaaacagactgaagtcatttagtactgaactgaagataggtttcagtgaattcgctgtaacatcaaacctcc ttgacctggtttacggtcaaggtcttgtctggttaggactgtacttctctcctttgcttgccatggtagccgtcatcaaa cttttcattgtgttctactttcgatatttcgttgccaaatttgccaatgtcccacccaaaaagatgtttaaagcgtccag atccgggacattttatctatttttattgctgatgacatggtttctgtgcattgttccagttggttatttcctctctgaac taacaccgtcgtggcactgtggacctttccaatctgagaagcgtgtatatgacgttatgggaatcaaccttagctctata tttacgggagatttcgcttgggtcaatgatgttgtccgatacatagggacagccattgttgtcatacctctcatcattgt attattgttggtgattttgtatttctacacaagggcaagttcctatagcagcctggtgaaagaactaaggacacaactaa tatttgaaagaagggtcgaacgaaagaaagtatttgcaaaggccttgtctgcaccagctggtagtgttggacgtgtaagt ggtacaagtatgtcaacgctgctagaagaaaattga |
Protein
Protein ID | pfu_aug1.0_21769.1_11410.t1 |
---|---|
Definition | - |
>pfu_aug1.0_21769.1_11410.t1 FNAPKEIAKTQDRKHGEDKITFKERILDGIKESTLPMKEKLKVHRMQVRYRKSKHTEQGDDYPFTWSMFCLWDHSIYTRS GVKNRLKSFSTELKIGFSEFAVTSNLLDLVYGQGLVWLGLYFSPLLAMVAVIKLFIVFYFRYFVAKFANVPPKKMFKASR SGTFYLFLLLMTWFLCIVPVGYFLSELTPSWHCGPFQSEKRVYDVMGINLSSIFTGDFAWVNDVVRYIGTAIVVIPLIIV LLLVILYFYTRASSYSSLVKELRTQLIFERRVERKKVFAKALSAPAGSVGRVSGTSMSTLLEEN |