Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_21774.1_40312
Locus scaffold21774.1 : 1 ... 6565 : +
To GenomeBrowser scaffold21774.1:1..6565
Genes list of scaffold scaffold21774.1
Synonym pfu_aug2.0_62.1_06843

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_21774.1_40312.t1 2 1 Abhydrolase_3 1 110 9.66896e-44 149.4 2.1e-32 7.9e-29 100.7
pfu_aug1.0_21774.1_40312.t1 2 1 Peptidase_S9 34 75 7.7e-06 25.2 2.1e-07 0.00077 18.7
pfu_aug1.0_21774.1_40312.t1 2 2 Abhydrolase_3 195 258 9.66896e-44 149.4 5.5e-16 2.0e-12 47.1
pfu_aug1.0_21774.1_40312.t1 2 2 Peptidase_S9 215 280 7.7e-06 25.2 0.0049 18.0 4.4

Transcript
Transcript IDpfu_aug1.0_21774.1_40312.t1
Definition-
>pfu_aug1.0_21774.1_40312.t1
atacatacgataaggtgatgagagatgtttgtgaacagactgaccacgtgattgttgtcccagagtaccgactaagtcct
gagcatcttttccctgctgccgtggaagactgtattgcagtgacggaatactttgttacgcatgcgtcggactttgacgt
gaatagggaaaaaattggagttggaggggatagtgcagggggaaatttagcggctgttgttagccaacacttcgcgaatg
acaagaacacaaatataaagctccacttccaggctttgatctatcctatgttacaagcctttgacttcagactgccatcg
tttatattgaatgacgggattttgtcacctgttttacatactgagaacattgtggcatcgtacctgatatactggagggg
gaaggaagccttaaagtacttacctcagttcgtggcaaacaatcacactaccgtgaaacttaaacaatcaaaatatgcca
actatttgaatatagactccttacccacggagataaagagtaatattcctgatgactttgaagaaagcttgaacgaaggt
gataaaatcatatgcaaagagtttgaaacaacgttgctcaatcctatgttttctcctttgttagcagacgatttttcaaa
tctcccgccaacatttctactgataggcggatatgacgtattgcgtgacgatgctctgctgtacacagcacgccttaagg
aagctggggtacctactagaacaatgcgtcgagatgatggttatcatgcaatgttttcctttacaagactcggcattggt
caagaagccttgagagatgttgttcattttctgaaatcacaccattga

Protein
Protein IDpfu_aug1.0_21774.1_40312.t1
Definition-
>pfu_aug1.0_21774.1_40312.t1
TYDKVMRDVCEQTDHVIVVPEYRLSPEHLFPAAVEDCIAVTEYFVTHASDFDVNREKIGVGGDSAGGNLAAVVSQHFAND
KNTNIKLHFQALIYPMLQAFDFRLPSFILNDGILSPVLHTENIVASYLIYWRGKEALKYLPQFVANNHTTVKLKQSKYAN
YLNIDSLPTEIKSNIPDDFEESLNEGDKIICKEFETTLLNPMFSPLLADDFSNLPPTFLLIGGYDVLRDDALLYTARLKE
AGVPTRTMRRDDGYHAMFSFTRLGIGQEALRDVVHFLKSHH

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495