Gene
| Gene Model ID | pfu_aug1.0_218546.1_14226 |
|---|---|
| Locus | scaffold218546.1 : 1 ... 516 : - |
| To GenomeBrowser | scaffold218546.1:1..516 |
| Genes list of scaffold | scaffold218546.1 |
| Synonym | pfu_aug2.0_797.1_24411 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | cytidine deaminase |
| Description | Best hit to EU101721 (abalone). 163 bits, 1e-38 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_218546.1_14226.t1 | 1 | 1 | dCMP_cyt_deam_1 | 9 | 105 | 9.6e-18 | 63.7 | 1.7e-21 | 1.2e-17 | 63.3 |
| pfu_aug1.0_218546.1_14226.t1 | 2 | 1 | dCMP_cyt_deam_2 | 10 | 74 | 5.1e-08 | 32.9 | 2.6e-11 | 1.9e-07 | 31.1 |
| pfu_aug1.0_218546.1_14226.t1 | 2 | 2 | dCMP_cyt_deam_2 | 125 | 137 | 5.1e-08 | 32.9 | 0.17 | 1300.0 | -0.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_218546.1_14226.t1 | gi|159146785|gb|ABW90692.1| | cytidine deaminase [Haliotis diversicolor supertexta] | 8.0e-39 |
Transcript
| Transcript ID | pfu_aug1.0_218546.1_14226.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_218546.1_14226.t1 atgaatcacggaagagacaagcgtattcaggacttggtgaaggcagcgatagaggtcaaagccaacgtctattgtcctta cagcaactttcgtgttggtgcttcactgctgacagaaaacgatgttattataacaggttgtaacgttgagaacgcatctt atgggctatctgtttgtgcagaacgagtagctattatgtttgctgtgtcacaaggtcataccaagttcaaggctgcggca gtttcatgtgacattaaaggatacttcaaagctccatgtggtgcttgtagacagttttattccgagttcaactttgacct tgacctttacctagtgaagccagacaatacagtaaaatgtgtcaaaatcagagacgttttaccgatggcgtttacaccgc agtcactcgaggaagacaggatctaa |
|
Protein
| Protein ID | pfu_aug1.0_218546.1_14226.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_218546.1_14226.t1 MNHGRDKRIQDLVKAAIEVKANVYCPYSNFRVGASLLTENDVIITGCNVENASYGLSVCAERVAIMFAVSQGHTKFKAAA VSCDIKGYFKAPCGACRQFYSEFNFDLDLYLVKPDNTVKCVKIRDVLPMAFTPQSLEEDRI |
|