Gene
| Gene Model ID | pfu_aug1.0_2189.1_51557 |
|---|---|
| Locus | scaffold2189.1 : 9536 ... 32825 : + |
| To GenomeBrowser | scaffold2189.1:9536..32825 |
| Genes list of scaffold | scaffold2189.1 |
| Synonym | pfu_aug2.0_10.1_00002 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2189.1_51557.t1 | 1 | 1 | Sterol-sensing | 554 | 671 | 2.50006e-41 | 140.6 | 7.00649e-45 | 2.50006e-41 | 140.6 |
| pfu_aug1.0_2189.1_51557.t1 | 1 | 1 | MMPL | 563 | 667 | 9.0e-06 | 24.6 | 4.3e-09 | 1.6e-05 | 23.7 |
| pfu_aug1.0_2189.1_51557.t1 | 2 | 1 | Patched | 564 | 671 | 5.0e-29 | 100.8 | 6.8e-30 | 2.5e-26 | 91.8 |
| pfu_aug1.0_2189.1_51557.t1 | 2 | 2 | Patched | 827 | 851 | 5.0e-29 | 100.8 | 2.9e-05 | 0.11 | 10.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2189.1_51557.t1 | gi|260786753|ref|XP_002588421.1| | hypothetical protein BRAFLDRAFT_116988 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2189.1_51557.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2189.1_51557.t1 atgaaaccgtctgacggtcaatttttgttcctgatgtacctaaaatttatgtatcgacttcctcagatggcagaggatgg gcagtgtatatggtatggtgaatgtgggacgtctcctactgggaaacttaactgtctgtacgaggggccggcaaagaagc tcaccgaccctacggggctacatctcttacaaacctactgtccagatctctacaaaggagatgacaacacatacacatgc tgtgacacacatcagttgatcactatagagggtaacatggggcttccccagcagttcttcaccagatgtccctcctgcta caacaacttcctcaatctatactgctacatgacatgcggtcgaaatcagagtaattacgtcaccctgaacaccacagctc cacctgtcatcaattctgtaaactattatgttacgcaccaatatgcatatggaatgtacaactcctgtaaggatgtacag atgcccagtgctaacaccaaagccatctctgttttctgtggtaccacagctgagaagtgctcaccacctgtctggctgac atacatgggtcaaacggctaatggccacgccccttttgacatatatttccatattgggtatgagaagaatataacagtaa atggcagtgttgtgttgcctatggattaccagactactccatgtgacaagtcttatgctaacaaatctgcctgcagttgt caggattgcgagtcgtcctgtatccctgtcccacctccgccacctccaaaacagccgtgtactgtcctcaagatcgactg ctggtacttcagtatgttcatcatctacctggcctttgcattgttcttcttgatgtacgtcatctgctacagtatcataa aacagaactctctaggcgttactgagaacagcaggtatgaggagatcagcagtgaagatgagaactgctgtgagtctgtt tactccgtcaatggaagtggtcgaccaatcaaaggaaagaaaagacgagctggagccgtaccagtgaattccttaccaga cttgacacacgcagaccttggctgtttggagaaattaggagctcacttggaaaaggttcttcaaaactttttcaccaagt ggggtacgttttgtgcccggcatccagcagtcatcatcttttttgggcttgctgtagctggaggtctatctgcaggaatc tccatgttcaaggtgactacagatcctgtccagttatggtctgctaaagacagcagagctaggctggagaaacacaaatt tgattcaaagtttgggccattttacagaacggagcagttgataattacccggccatataataagactcttgtgaagcata acaaccctcccccatcagtagattatgtcaactacacatcattattcgataagacattcttacatatggtactagatcta cagttagcagttgagggcttaacagcagagtacaacggggagaatgtcacactgaaggacatttgttctaagcccctgga gcccgataacgacaactgtaccatacaaagtatcctccaatactggcaaaacgaccaccataatattgacaaggtcaaga tggatcagtttggtttctacgtgctagctgattacctggaccacttccactactgtgtcaactatatgggtgtggcagcc accctcatcattatagaagtcgtacctttcctcgtactggcagtgggcgtcgacaatatcttcatcttagtacagacata ccagagagagaagcctttaccaaatgagacagtagaggagaaagttggccgtattgttggtaaagtgggccccagtatgt tactgtctagctcctcggagtctatcgccttcttcctaggtgcccttaccagtatgccagcagtaagagttttctccctt tatgctggattagccgtccttattgacttcctgttacagattaccgtatttgttgcccttatgactattgatgctaaaag acaaaaggattcctatgtactggactactttaaacacctgagcgagtacctacacgtaggggcacctgtttattttgtgg ctgatgatgggattgactttaccacacctgagggacagaatatggtgtgtggagtggacactaacgatacagaggacaag tgtgcaccctgtccaataatgacatccaaatcacagggcagacccactccacacgacttcatcaaatacctaccatggta cttatctgacaatccaggcaccaagtgtgctaaaggaggacatgctgcatatggatctgctgttaatttactcaataaca aaaccaaagttggagcatcttactttatgacataccacactatcctgaagaccaatgccgactatatcggggctttgcga gaagctaggaaaatagctgataatatcacacatactatacagtcaaagataaacaccaattctactgttttcccttacag gatgtatttagccatggtactttttggagctactcatggccttattttcttgccagtattgctaagttatatagggccac ctttaaacaaagcaagattatatttatatcaaaaagttaagagaacgcacggtgatacagacactgacattttagtggat aatgatgctaataatccacctacatatcagaatgtttctgacgctaacaacgatgatttacccaggtatcacgacttaag gacataa |
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Protein
| Protein ID | pfu_aug1.0_2189.1_51557.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2189.1_51557.t1 MKPSDGQFLFLMYLKFMYRLPQMAEDGQCIWYGECGTSPTGKLNCLYEGPAKKLTDPTGLHLLQTYCPDLYKGDDNTYTC CDTHQLITIEGNMGLPQQFFTRCPSCYNNFLNLYCYMTCGRNQSNYVTLNTTAPPVINSVNYYVTHQYAYGMYNSCKDVQ MPSANTKAISVFCGTTAEKCSPPVWLTYMGQTANGHAPFDIYFHIGYEKNITVNGSVVLPMDYQTTPCDKSYANKSACSC QDCESSCIPVPPPPPPKQPCTVLKIDCWYFSMFIIYLAFALFFLMYVICYSIIKQNSLGVTENSRYEEISSEDENCCESV YSVNGSGRPIKGKKRRAGAVPVNSLPDLTHADLGCLEKLGAHLEKVLQNFFTKWGTFCARHPAVIIFFGLAVAGGLSAGI SMFKVTTDPVQLWSAKDSRARLEKHKFDSKFGPFYRTEQLIITRPYNKTLVKHNNPPPSVDYVNYTSLFDKTFLHMVLDL QLAVEGLTAEYNGENVTLKDICSKPLEPDNDNCTIQSILQYWQNDHHNIDKVKMDQFGFYVLADYLDHFHYCVNYMGVAA TLIIIEVVPFLVLAVGVDNIFILVQTYQREKPLPNETVEEKVGRIVGKVGPSMLLSSSSESIAFFLGALTSMPAVRVFSL YAGLAVLIDFLLQITVFVALMTIDAKRQKDSYVLDYFKHLSEYLHVGAPVYFVADDGIDFTTPEGQNMVCGVDTNDTEDK CAPCPIMTSKSQGRPTPHDFIKYLPWYLSDNPGTKCAKGGHAAYGSAVNLLNNKTKVGASYFMTYHTILKTNADYIGALR EARKIADNITHTIQSKINTNSTVFPYRMYLAMVLFGATHGLIFLPVLLSYIGPPLNKARLYLYQKVKRTHGDTDTDILVD NDANNPPTYQNVSDANNDDLPRYHDLRT |
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