Gene
| Gene Model ID | pfu_aug1.0_2189.1_51558 |
|---|---|
| Locus | scaffold2189.1 : 38596 ... 49869 : + |
| To GenomeBrowser | scaffold2189.1:38596..49869 |
| Genes list of scaffold | scaffold2189.1 |
| Synonym | pfu_aug2.0_10.1_00001 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2189.1_51558.t1 | 2 | 1 | Thi4 | 48 | 78 | 5.2e-06 | 25.7 | 8.4e-06 | 0.016 | 14.3 |
| pfu_aug1.0_2189.1_51558.t1 | 1 | 1 | FAD_binding_2 | 49 | 443 | 0.0 | 421.4 | 0.0 | 0.0 | 421.0 |
| pfu_aug1.0_2189.1_51558.t1 | 1 | 1 | Pyr_redox_2 | 49 | 428 | 2.9e-08 | 33.8 | 1.2e-09 | 2.2e-06 | 27.6 |
| pfu_aug1.0_2189.1_51558.t1 | 2 | 2 | Thi4 | 413 | 440 | 5.2e-06 | 25.7 | 0.00071 | 1.3 | 8.0 |
| pfu_aug1.0_2189.1_51558.t1 | 1 | 1 | Succ_DH_flav_C | 498 | 650 | 1.20512e-43 | 148.0 | 0.0 | 1.90577e-43 | 147.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2189.1_51558.t1 | gi|41053873|ref|NP_957204.1| | succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor [Danio rerio] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2189.1_51558.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2189.1_51558.t1 atgattgttatacagttatcaaaagcagtcaaaccactagtatcatgtcaaagagactttcatttcaaaatctttggaca gaatcaaggatctaaaacgggtgaaaagatttccaatgactaccccgtcgttgatcacacatttgatgcagttgttgtcg gtgccggaggggcgggacttagagctgcctttggattggccaatgaaggatttaatacagcatgtatcacaaaactcttc cccacaagatcacacacagtggcagctcagggaggtataaatgctgctatgggccacatggaggaagaccattggcatta ccatttctacgacacagtgaagggatctgattggctgggagaccaagacgctattcattacatgtgtgaagaggcaccta aagctgttattgagcttgagaactatggcatgcctttcagtcgtcttgagaatggtaagatttaccagagagctttcgga ggacagagtattaactacggtaaaggtggacaagctcatagatgttgttgtgtggccgacagaactggacattcactatt acacacactgtatggacggtctttgaaatatgacacaaaatacttcatagagtactttgccctggatcttataatggaag atggtgaatgtagaggagtgactgccctttgtttggaggacggcacaatccatagatttaaatccaagaataccattttg gctactggaggttatggtagatcgtatttctcgtgtacctccgcccacacgtgtaccggagatggtacagctatggtatc cagggctggacttcctaatgaagacatggagtttgtacagttccatcccacaggtatctatggagccgggtgtcttatca cagagggatcccgaggggagggaggctacctaataaactccgagggggagagatacatggaacgttatgcccccacagcc aaggatctggcttctagagatgtggtgtccagggctagtacaatagagatcagggaaggaagaggagtgggtccggataa ggatcatgtttacctacagctttcccatctcccccctgaggtgttacacagccgattgccaggaatctccgagacggcga tgatttttgcgggagttgatgtcactaaagatcccatccctgtactccctactgtacactacaacatgggaggggtacca actaactacaaaggacaggtaatcacataccagaatggtcaggacaaggttataccaggtctgtacgcctgcggtgaagc cgcctgcgcctcagtacacggtgctaacaggctcggagctaactcactactagatcttgttgtgtttggtcgagcttgtg ctaatactataatacaggaaaacaaacctggagagaagattggaagcattaaacagaatgctggagaagagtctgtggct aacattgacaaactgcgacatgctaacggtgatattcctacagcagatctcagactctccatgcagaaagctatgcagac ccatgcagcagtgttcagagacggtcctggaatgaaggagggagtacagaaactagaaagtctttataaagacatggaaa acgtcaaggtatctgacaggggaatggtgtggaacacagatttaatagaaacattagagttacagaaccttatgatcaac tcagtacaaactatagtatcagctgaagctaggaaggaaagtagaggtgctcatcacagggaagacttccaaaaaagatt agatgaatacgattatagtaaaccactagagggacaacagaaaaaagatattaaagatcactggaggaaacactcattat catttgttgatactgattcaggaaagactacaatggaatatcgacctgtaattgactctacattagatcctgatgcatgt gagcaaatccctcctgccatcagatcatactaa |
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Protein
| Protein ID | pfu_aug1.0_2189.1_51558.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2189.1_51558.t1 MIVIQLSKAVKPLVSCQRDFHFKIFGQNQGSKTGEKISNDYPVVDHTFDAVVVGAGGAGLRAAFGLANEGFNTACITKLF PTRSHTVAAQGGINAAMGHMEEDHWHYHFYDTVKGSDWLGDQDAIHYMCEEAPKAVIELENYGMPFSRLENGKIYQRAFG GQSINYGKGGQAHRCCCVADRTGHSLLHTLYGRSLKYDTKYFIEYFALDLIMEDGECRGVTALCLEDGTIHRFKSKNTIL ATGGYGRSYFSCTSAHTCTGDGTAMVSRAGLPNEDMEFVQFHPTGIYGAGCLITEGSRGEGGYLINSEGERYMERYAPTA KDLASRDVVSRASTIEIREGRGVGPDKDHVYLQLSHLPPEVLHSRLPGISETAMIFAGVDVTKDPIPVLPTVHYNMGGVP TNYKGQVITYQNGQDKVIPGLYACGEAACASVHGANRLGANSLLDLVVFGRACANTIIQENKPGEKIGSIKQNAGEESVA NIDKLRHANGDIPTADLRLSMQKAMQTHAAVFRDGPGMKEGVQKLESLYKDMENVKVSDRGMVWNTDLIETLELQNLMIN SVQTIVSAEARKESRGAHHREDFQKRLDEYDYSKPLEGQQKKDIKDHWRKHSLSFVDTDSGKTTMEYRPVIDSTLDPDAC EQIPPAIRSY |
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