Gene
| Gene Model ID | pfu_aug1.0_21960.1_54806 |
|---|---|
| Locus | scaffold21960.1 : 2941 ... 8775 : - |
| To GenomeBrowser | scaffold21960.1:2941..8775 |
| Genes list of scaffold | scaffold21960.1 |
| Synonym | pfu_aug2.0_1443.1_11670 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_21960.1_54806.t1 | 3 | 1 | zf-C3HC4_3 | 34 | 88 | 2.9e-06 | 26.8 | 2.4e-09 | 2.9e-06 | 26.8 |
| pfu_aug1.0_21960.1_54806.t1 | 2 | 1 | zf-C3HC4 | 36 | 80 | 1.0e-07 | 31.4 | 8.2e-11 | 1.0e-07 | 31.4 |
| pfu_aug1.0_21960.1_54806.t1 | 2 | 2 | zf-C3HC4 | 80 | 102 | 1.0e-07 | 31.4 | 0.14 | 170.0 | 1.9 |
| pfu_aug1.0_21960.1_54806.t1 | 2 | 1 | zf-B_box | 122 | 167 | 2.3e-08 | 33.7 | 4.0e-08 | 5.0e-05 | 23.1 |
| pfu_aug1.0_21960.1_54806.t1 | 3 | 2 | zf-C3HC4_3 | 124 | 155 | 2.9e-06 | 26.8 | 0.33 | 410.0 | 0.7 |
| pfu_aug1.0_21960.1_54806.t1 | 2 | 2 | zf-B_box | 183 | 214 | 2.3e-08 | 33.7 | 8.9e-09 | 1.1e-05 | 25.2 |
| pfu_aug1.0_21960.1_54806.t1 | 3 | 3 | zf-C3HC4_3 | 606 | 614 | 2.9e-06 | 26.8 | 0.78 | 960.0 | -0.5 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_21960.1_54806.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21960.1_54806.t1 atgaatccaaaaggcggtttcaccctttggacgcagacttcacgtgatacttcgatcagaaacatggcaacttcaaacaa ttctccacttaccgaactaacgttgtgttctatttgttttgagagatttaaatgccccaaaacttttccatgtttacata acttttgtgaatcgtgcatcgggagttatcttgcatcgatatttgagaaagaaaaagataaagttaagtgtgtcagttgt ccaatttgccgagcggacgttgaaaagccacaagacgtgaatacatcagaggaatggattaaatgcttacctacaaatca tatgttagtcagtatggtcgaagcggttactggttttcaacatgaaaatatttgcaattcatgcaatatcgaaaacaaaa ccgaaagtgcagtgtattggtgcgcggattgccggaaggccctttgtgaattttgtgaacgaaaacatacatattttata caagggcacaaagtgataaatgtgaaacaaatgactgaaattgaacccaaggccctgagtgccagtatcaagtgtccaag gcacgaagggaaagcaatagaggcgtactgctttgaccacaataccccttgttgttcatcttgcgttatgattacccatc gtaaatgtagcagagtcgaagaagcaaaaattgcagcagaggaattaagaaactcgaaagagatccttggattacaggaa gattttgatattcacagaaagaaaatgggagagctgtcagacaaaactgctgaaaatgtaaaatcattccaggataaagt agccgaccttcatagtgagatcacaacgctacgatcagatataaacagacatttggacgacatagaattgaaagcaaaac aagaactgaatgccattgagaaagaacatttaccagaaatggaagcaactgtacaaatgatgtcaggagaaacaaaacga gcagagaatgatttgataatgctgaaggcaagtgtccaatatgcttcagatgagcagtttttgtgcgacattgaaataat gagaaatgaatcgaacaaaatcaaggaattttgggaacaaaacagaataaagttcaattacaagaagttgatctttgaaa tgaatgttgaattaaagagtctaaaaaatgtccagaccttcatgcatgtaaacctcacagaggataagatggtaatggaa tcagatccagttgacctactccaggctgagccggtgaaaatatcacaatttgatatagatatcaattgttccaacatcac aggatgcgtcatggttgatggcaaaagattactcctagcaacatattcacttaatcgcgttgatatgtatggaatagatg ggacatatctgtcttgtcttaaccttggaaatgaggtctggggtgtcgatgttattgacaagaatactggagttgcaaca atgcggactacaggaaaggtagttctattttctattgaagacaagaatctgacattgataaaaactgtgggattttcaaa ttgtgcaaacatctgtgggataaaaagctatatgggaaaaatctacgttggttgtaccaacaaaataattgttctgaata agaatggtttatgtatcgaagaaatagcccagccttcacagaattggatacgccatctaagtatttcagatgataaaatt gtatataccaattgtaatgtagtgcagtgtatcacgctacatggatggcacgtcttccaatcctcatccaaggatctaat ttctcccgagggaatcggtacggactgtgacaataatatctatgtaattggtcagacatcatgcaatatctgtcagctca accctcagggaacgtttcaccgagttctactccaaaatctatcgtcaggaagcattaattccctctccttctgtagacaa actaatagacttttgttcaacacagggaggactgtctatatctatgagatgaagaggaagcagtcacaggctccatag |
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Protein
| Protein ID | pfu_aug1.0_21960.1_54806.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21960.1_54806.t1 MNPKGGFTLWTQTSRDTSIRNMATSNNSPLTELTLCSICFERFKCPKTFPCLHNFCESCIGSYLASIFEKEKDKVKCVSC PICRADVEKPQDVNTSEEWIKCLPTNHMLVSMVEAVTGFQHENICNSCNIENKTESAVYWCADCRKALCEFCERKHTYFI QGHKVINVKQMTEIEPKALSASIKCPRHEGKAIEAYCFDHNTPCCSSCVMITHRKCSRVEEAKIAAEELRNSKEILGLQE DFDIHRKKMGELSDKTAENVKSFQDKVADLHSEITTLRSDINRHLDDIELKAKQELNAIEKEHLPEMEATVQMMSGETKR AENDLIMLKASVQYASDEQFLCDIEIMRNESNKIKEFWEQNRIKFNYKKLIFEMNVELKSLKNVQTFMHVNLTEDKMVME SDPVDLLQAEPVKISQFDIDINCSNITGCVMVDGKRLLLATYSLNRVDMYGIDGTYLSCLNLGNEVWGVDVIDKNTGVAT MRTTGKVVLFSIEDKNLTLIKTVGFSNCANICGIKSYMGKIYVGCTNKIIVLNKNGLCIEEIAQPSQNWIRHLSISDDKI VYTNCNVVQCITLHGWHVFQSSSKDLISPEGIGTDCDNNIYVIGQTSCNICQLNPQGTFHRVLLQNLSSGSINSLSFCRQ TNRLLFNTGRTVYIYEMKRKQSQAP |
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