Gene
| Gene Model ID | pfu_aug1.0_2205.1_01014 |
|---|---|
| Locus | scaffold2205.1 : 1 ... 5072 : + |
| To GenomeBrowser | scaffold2205.1:1..5072 |
| Genes list of scaffold | scaffold2205.1 |
| Synonym | pfu_aug2.0_71.1_03558 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2205.1_01014.t1 | 4 | 1 | zf-H2C2_2 | 349 | 362 | 2.6e-09 | 36.9 | 0.099 | 490.0 | 1.3 |
| pfu_aug1.0_2205.1_01014.t1 | 3 | 1 | zf-C2H2 | 352 | 374 | 1.1e-10 | 41.2 | 3.3e-06 | 0.016 | 15.4 |
| pfu_aug1.0_2205.1_01014.t1 | 3 | 1 | zf-C2H2_4 | 352 | 374 | 6.9e-06 | 26.0 | 0.00044 | 2.2 | 8.8 |
| pfu_aug1.0_2205.1_01014.t1 | 4 | 2 | zf-H2C2_2 | 366 | 384 | 2.6e-09 | 36.9 | 6.1e-08 | 0.0003 | 20.9 |
| pfu_aug1.0_2205.1_01014.t1 | 3 | 2 | zf-C2H2 | 380 | 404 | 1.1e-10 | 41.2 | 1.4e-06 | 0.0069 | 16.6 |
| pfu_aug1.0_2205.1_01014.t1 | 3 | 2 | zf-C2H2_4 | 380 | 404 | 6.9e-06 | 26.0 | 1.9e-05 | 0.092 | 13.1 |
| pfu_aug1.0_2205.1_01014.t1 | 4 | 3 | zf-H2C2_2 | 397 | 420 | 2.6e-09 | 36.9 | 1.4e-10 | 6.7e-07 | 29.2 |
| pfu_aug1.0_2205.1_01014.t1 | 3 | 3 | zf-C2H2 | 410 | 432 | 1.1e-10 | 41.2 | 7.7e-08 | 0.00038 | 20.6 |
| pfu_aug1.0_2205.1_01014.t1 | 3 | 3 | zf-C2H2_4 | 410 | 432 | 6.9e-06 | 26.0 | 4.0e-06 | 0.02 | 15.2 |
| pfu_aug1.0_2205.1_01014.t1 | 4 | 4 | zf-H2C2_2 | 425 | 436 | 2.6e-09 | 36.9 | 0.14 | 670.0 | 0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2205.1_01014.t1 | gi|84458467|dbj|BAE72065.1| | kruppel-like factor [Ambigolimax valentianus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2205.1_01014.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2205.1_01014.t1 gttgtgaccgatttcgagaagtacctatcgccgaatgatttggctttgaatgcaaagaagaacaggcgagagagttcatc tctcgtggatgaattttttcaggatgacaagaattcgccagaactgacgagcgccaaggagagaatcagtcagctaacca ggaatggatttgctgagttcgggcatcttcgtaccgggcttatccgacaaccgccagagatggtcaggcgcgactccagg gaaggggacgatacaggagctgaagatttcttcacggaatctaatctgaagaagctcgggttcttgaagtcccccgcgaa aatgaagactgatgctagagttttcgacatatcagaaaccgttatggacaccagtactatagtccctaataattttaacg agcttcaagagcagagtcgacaagtggacgattcaatctgggaagacctaaaagacagtatgaacatggtgaatgctaat gactctagagatgcagacgttatagtcaaacgtgaagaaaattttaagccatgccagtttcaaaatgttaaaaattcatg ttcattcgataacgtatctgtaaagatagaaccttctacatctagttgtttgatggcgaaatccaattcatgtgaaaacc taagttcacgaccgacaactctaccagtttctcaacaagtcatggcaggttcctcaatagcacagtatctcgcacagatg aataacatgagtaaatcccacgtaacatctaacagaaatttcattcccacatcaacaccgccccatatggttccggtcct catgccccctaccccacccagttcagagcccaatagtcccagtcaagactacgtcagaaggacaccgccacccccgtatc cagggctgcaaagttctatgaacattttcaatcagttggcaattcagcctattccttttaactccaaccctaaaaggagt acgaccaagccccagcagactcaccctggatgctccactatcaagtacaataggaaaaacaacccggagctcgaaaagag gagaattcatttctgtgactatccaggttgcagaaaagcttacacgaaaagttcccacttgaaagcacatcaaagaatcc atacaggagagaagccgtacaaatgtcatttccagaactgtatgtggagattcgctcgttctgacgagttgacacgtcac atccggaaacacaccggcgcaaagcccttcaaatgtaaagtttgcgagcgatgctttgcacgatctgatcatctggccct ccacatgaaacgtcacgaacccaagaagtga |
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Protein
| Protein ID | pfu_aug1.0_2205.1_01014.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2205.1_01014.t1 VVTDFEKYLSPNDLALNAKKNRRESSSLVDEFFQDDKNSPELTSAKERISQLTRNGFAEFGHLRTGLIRQPPEMVRRDSR EGDDTGAEDFFTESNLKKLGFLKSPAKMKTDARVFDISETVMDTSTIVPNNFNELQEQSRQVDDSIWEDLKDSMNMVNAN DSRDADVIVKREENFKPCQFQNVKNSCSFDNVSVKIEPSTSSCLMAKSNSCENLSSRPTTLPVSQQVMAGSSIAQYLAQM NNMSKSHVTSNRNFIPTSTPPHMVPVLMPPTPPSSEPNSPSQDYVRRTPPPPYPGLQSSMNIFNQLAIQPIPFNSNPKRS TTKPQQTHPGCSTIKYNRKNNPELEKRRIHFCDYPGCRKAYTKSSHLKAHQRIHTGEKPYKCHFQNCMWRFARSDELTRH IRKHTGAKPFKCKVCERCFARSDHLALHMKRHEPKK |
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