Gene
| Gene Model ID | pfu_aug1.0_2211.1_44283 |
|---|---|
| Locus | scaffold2211.1 : 107346 ... 134537 : + |
| To GenomeBrowser | scaffold2211.1:107346..134537 |
| Genes list of scaffold | scaffold2211.1 |
| Synonym | pfu_aug2.0_1083.1_11422 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2211.1_44283.t1 | 2 | 1 | DUF1308 | 30 | 188 | 0.0 | 266.8 | 5.2e-36 | 7.8e-32 | 110.3 |
| pfu_aug1.0_2211.1_44283.t1 | 2 | 2 | DUF1308 | 322 | 469 | 0.0 | 266.8 | 0.0 | 0.0 | 157.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2211.1_44283.t1 | gi|62859425|ref|NP_001016099.1| | UPF0415 protein C7orf25 homolog [Xenopus (Silurana) tropicalis] | 5.00264e-43 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2211.1_44283.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2211.1_44283.t1 atgactctatatgcacgtaagactataatttatcaggggctttataatcaaaagtcccataaaaccacttggttgaaaaa gcgtcatgtcaacacaaatgagagtgaactcaaaagcagtaacctgagccactttactggtatcctacactctgcatgtc actttcctgacgtcacgaggctgctcagaccgttctctttggcaggaaaaaatgagagcctcgttgtggacgtcgtcgca ggtcaaggacgaatttggatcaaggtcatcgcaaggaaggcgcaagcattgcatcttatttgggcagggaaggggcagtt tggagagagggatttggccaagcaagccgaagactacgtaaaatgtgcagacgagcatcacgtatgtttcgccccacccc aagtacattttgtattttacaatcaagtgaccgcgcccatggctgcggagctagagagaagaggggtggtggtgtgggga gaaagggtggaggtcagtcaagaagtcctagacaaagttcaacttgttgaagacttttctgatgatgatgacgatgacga tgaggaggaagaaaacgatgatattagcgatgacagcgccacagatgagaatgataacgatgaaaatcaaaatattaacc ataggttaccgagtagtgatctttcaaggtcgtgtagtgggatacaatctcttcacatagctaatgacatacatacggat acgtccgcccaagtcagtaaaagtgatagtgactcggaagcagacgttcaccaagtcaataaatctagtcgggacgcaag tgtatcaagtcataagagtcacgagtcacaaagtgcagtcaataaaggaacgacagacaaacccgctgtctccaaatact tagacttctttgctgtctgtgatattatacccagaattattacctcattcccttttcactcgtccgaagaccttaatcaa gtgcttcaggagtccataaatcgttcagagaagtcgttaaatcttgatattacgacgctaatcaccatggtttcctctgt gactcacggtggctgcaatttcatatttcccgaaagtatacttacacaacaggccgaggaagagaggaagacgccggtgc tacccttacttaacaaattactgaaaggaaaggatctctttgcatgtcagacagcagtagagagtttctacagcgtcctt aacacgcttggaggcatcaaagagaaggaaagagctgcagagtttatgaagagagtgagagtggtgccagatcaaccgtc agagagaaccaaactgttaccagagacgggcaaaataaaaaaacgctctaaggtgatatttggaacaggggatgaactga aggcaatcacagtaacagctaatgtgggatttgtcagggcggcagaacacatgatttgggaacagttgagtataacagac aggataaggtacgatggcaaccagatggatcattggtattttctctgctatacaagatacctccattcaatgaaaggaag ggatcttcaacaacactcggttgcaacacccacagcaaatcaccaaaacacctcatgcaaaaacacagggcagacaggca cagcaaaagcgcaaaatggacaaagaacaccaaatctcattatagaaacgtcggacatagaagaccatagaccaacgaga ccaatggacaatgactctaagtacgcttttgtggaagaaaataaaagacataaccttcgatga |
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Protein
| Protein ID | pfu_aug1.0_2211.1_44283.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2211.1_44283.t1 MTLYARKTIIYQGLYNQKSHKTTWLKKRHVNTNESELKSSNLSHFTGILHSACHFPDVTRLLRPFSLAGKNESLVVDVVA GQGRIWIKVIARKAQALHLIWAGKGQFGERDLAKQAEDYVKCADEHHVCFAPPQVHFVFYNQVTAPMAAELERRGVVVWG ERVEVSQEVLDKVQLVEDFSDDDDDDDEEEENDDISDDSATDENDNDENQNINHRLPSSDLSRSCSGIQSLHIANDIHTD TSAQVSKSDSDSEADVHQVNKSSRDASVSSHKSHESQSAVNKGTTDKPAVSKYLDFFAVCDIIPRIITSFPFHSSEDLNQ VLQESINRSEKSLNLDITTLITMVSSVTHGGCNFIFPESILTQQAEEERKTPVLPLLNKLLKGKDLFACQTAVESFYSVL NTLGGIKEKERAAEFMKRVRVVPDQPSERTKLLPETGKIKKRSKVIFGTGDELKAITVTANVGFVRAAEHMIWEQLSITD RIRYDGNQMDHWYFLCYTRYLHSMKGRDLQQHSVATPTANHQNTSCKNTGQTGTAKAQNGQRTPNLIIETSDIEDHRPTR PMDNDSKYAFVEENKRHNLR |
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