Gene
Gene Model ID | pfu_aug1.0_222.1_50725 |
---|---|
Locus | scaffold222.1 : 30526 ... 42612 : + |
To GenomeBrowser | scaffold222.1:30526..42612 |
Genes list of scaffold | scaffold222.1 |
Synonym | pfu_aug2.0_812.1_07923 |
Manual annotation
Study field | other |
---|---|
Gene name | SMAD5 like |
Description | BLASTP best hit to NCBI Accession EAW62194 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_222.1_50725.t1 | 1 | 1 | MH2 | 100 | 167 | 8.7e-26 | 90.8 | 7.4e-30 | 1.1e-25 | 90.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_222.1_50725.t1 | gi|1763543|gb|AAB39737.1| | Smad5 [Mus musculus] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_222.1_50725.t1 |
---|---|
Definition | - |
>pfu_aug1.0_222.1_50725.t1 atgcccccctttcaacaagcccccgagcctgctatgccccagaatgtcagctttgatcctaatggattccaccagtctca gggcccgcattctccagctagctctggacctggcagtccttatgggttacctgctggaacacctcctcccgcctatcagc ctcatgatgaaaatcccaacatgggaccgcccaacaatccaaaccgtaacacacggaaccatcaacccatggacaccatg ccctcccaaaccacaggaccagggggacgtattactgatctccaaccagtcacgtaccaggaaccacagtactggtgttc tattgtctattatgaactaaataatcgtgtgggtgaagccttccatgcatctcagaccagcattgtggttgatggattca ccgacccctctaataacgcagacaggttctgtctaggactgttgtccaatgtaaacaggaattcaaccatcgaaaataca cgaagacacatcagcaaaggtttgtaa |
Protein
Protein ID | pfu_aug1.0_222.1_50725.t1 |
---|---|
Definition | - |
>pfu_aug1.0_222.1_50725.t1 MPPFQQAPEPAMPQNVSFDPNGFHQSQGPHSPASSGPGSPYGLPAGTPPPAYQPHDENPNMGPPNNPNRNTRNHQPMDTM PSQTTGPGGRITDLQPVTYQEPQYWCSIVYYELNNRVGEAFHASQTSIVVDGFTDPSNNADRFCLGLLSNVNRNSTIENT RRHISKGL |