Gene
| Gene Model ID | pfu_aug1.0_222.1_50725 |
|---|---|
| Locus | scaffold222.1 : 30526 ... 42612 : + |
| To GenomeBrowser | scaffold222.1:30526..42612 |
| Genes list of scaffold | scaffold222.1 |
| Synonym | pfu_aug2.0_812.1_07923 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | SMAD5 like |
| Description | BLASTP best hit to NCBI Accession EAW62194 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_222.1_50725.t1 | 1 | 1 | MH2 | 100 | 167 | 8.7e-26 | 90.8 | 7.4e-30 | 1.1e-25 | 90.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_222.1_50725.t1 | gi|1763543|gb|AAB39737.1| | Smad5 [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_222.1_50725.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_222.1_50725.t1 atgcccccctttcaacaagcccccgagcctgctatgccccagaatgtcagctttgatcctaatggattccaccagtctca gggcccgcattctccagctagctctggacctggcagtccttatgggttacctgctggaacacctcctcccgcctatcagc ctcatgatgaaaatcccaacatgggaccgcccaacaatccaaaccgtaacacacggaaccatcaacccatggacaccatg ccctcccaaaccacaggaccagggggacgtattactgatctccaaccagtcacgtaccaggaaccacagtactggtgttc tattgtctattatgaactaaataatcgtgtgggtgaagccttccatgcatctcagaccagcattgtggttgatggattca ccgacccctctaataacgcagacaggttctgtctaggactgttgtccaatgtaaacaggaattcaaccatcgaaaataca cgaagacacatcagcaaaggtttgtaa |
|
Protein
| Protein ID | pfu_aug1.0_222.1_50725.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_222.1_50725.t1 MPPFQQAPEPAMPQNVSFDPNGFHQSQGPHSPASSGPGSPYGLPAGTPPPAYQPHDENPNMGPPNNPNRNTRNHQPMDTM PSQTTGPGGRITDLQPVTYQEPQYWCSIVYYELNNRVGEAFHASQTSIVVDGFTDPSNNADRFCLGLLSNVNRNSTIENT RRHISKGL |
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