Gene
| Gene Model ID | pfu_aug1.0_22256.1_18860 |
|---|---|
| Locus | scaffold22256.1 : 1 ... 6688 : + |
| To GenomeBrowser | scaffold22256.1:1..6688 |
| Genes list of scaffold | scaffold22256.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Chitin synthase like protein |
| Description | Chitin synthase like protein, hit to BLAST (NCBI, ADY49468.1) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_22256.1_18860.t1 | 2 | 1 | Glyco_tranf_2_3 | 72 | 100 | 9.5e-10 | 38.6 | 0.65 | 3200.0 | -2.4 |
| pfu_aug1.0_22256.1_18860.t1 | 1 | 1 | Glyco_trans_2_3 | 123 | 260 | 7.8e-12 | 45.3 | 2.3e-15 | 1.1e-11 | 44.7 |
| pfu_aug1.0_22256.1_18860.t1 | 2 | 2 | Glyco_tranf_2_3 | 123 | 231 | 9.5e-10 | 38.6 | 3.8e-13 | 1.9e-09 | 37.6 |
| pfu_aug1.0_22256.1_18860.t1 | 1 | 1 | Chitin_synth_2 | 126 | 233 | 4.5e-21 | 74.8 | 2.0e-24 | 9.8e-21 | 73.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_22256.1_18860.t1 | gi|268533964|ref|XP_002632112.1| | C. briggsae CBR-CHS-2 protein [Caenorhabditis briggsae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_22256.1_18860.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_22256.1_18860.t1 cctcccctgtttatgttgtcatcttaattgtgctgagagaaacaaacacagaagtgctgtatgacgggattggttttaac accatttcaaatgaatatgggttgttcgttctgccccatttcgtcagtgcatacattgatctgtcgatgttacacagcag aaaacgaaagttatccgcccagacctccaagagagaagacaaggatacccccactccaaaagtctatatctgtgcaacca tgtggcacgaaaacaggactgaaatgaaacaaatccttacttccatcttcagactggatttagatcaatttgcacggaaa gcaaaccgaaaactaggggaaactgattactacgagtttgaagggccgttggtatggtaccaacgattcgaatacgctat cggtcattggctacagaaatcagcagagcacgtgtttgggtgtgtcctgtgtagtccgggttgtttcagtatgtttcgga tgaaagccttaatggacgataacgtgatgagaacgtatgcatctcttcctacggaacccaagcacttcctacaatacgat caaggagaagataggtggttatgtacacttttgcttcaacaaggatatcggattgagtactgcgcagctgcggaagctct cacatttgcgccagaggaattcaaagaatttttcaaccagcgaagaagatggatgccgtccgtccacagtcctccttgca atgtactccgccataaattcagttttctcaatacccacatggcttggttactgtcttgtttacgtacctgtaatactatt cattgttgcctgtctaaagctgaaatcgaacactcagttgaacatcgcaatggttctgagcgctgtttatgctctactga tgatggccgtgttcgtcggtacgcttgtaagtatcgcgagtga |
|
Protein
| Protein ID | pfu_aug1.0_22256.1_18860.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_22256.1_18860.t1 SPVYVVILIVLRETNTEVLYDGIGFNTISNEYGLFVLPHFVSAYIDLSMLHSRKRKLSAQTSKREDKDTPTPKVYICATM WHENRTEMKQILTSIFRLDLDQFARKANRKLGETDYYEFEGPLVWYQRFEYAIGHWLQKSAEHVFGCVLCSPGCFSMFRM KALMDDNVMRTYASLPTEPKHFLQYDQGEDRWLCTLLLQQGYRIEYCAAAEALTFAPEEFKEFFNQRRRWMPSVHSPPCN VLRHKFSFLNTHMAWLLSCLRTCNTIHCCLSKAEIEHSVEHRNGSERCLCSTDDGRVRRYACKYRE |
|