Gene
| Gene Model ID | pfu_aug1.0_2228.1_66243 |
|---|---|
| Locus | scaffold2228.1 : 41556 ... 60225 : - |
| To GenomeBrowser | scaffold2228.1:41556..60225 |
| Genes list of scaffold | scaffold2228.1 |
| Synonym | pfu_aug2.0_61.1_03541 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2228.1_66243.t1 | 2 | 1 | Aldose_epim | 52 | 107 | 0.0 | 360.9 | 1.1e-16 | 7.9e-13 | 48.1 |
| pfu_aug1.0_2228.1_66243.t1 | 2 | 2 | Aldose_epim | 202 | 520 | 0.0 | 360.9 | 0.0 | 0.0 | 312.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2228.1_66243.t1 | gi|260803906|ref|XP_002596830.1| | hypothetical protein BRAFLDRAFT_284587 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 3 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2228.1_66243.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2228.1_66243.t1 atggatgagagtaagagagaattcagtcacgtgaaaatcaaatctttcgactacggtagaaaaagacggaactttgtggt aattgtttgtgcggttgccatagtgatcacggctctcatttgtgttgtaatttatttgggagtaaaggcatcacaatgtt cagagtacacagtaaatccatcttacttcggtgccatcgtcgggagatatgcaaacagagtggccaatggtcagttcatt atagatggcgccacatacaacataccccaaattcaacactgggtgaacagccttcatggaggtacaaaaggatttgacaa ggtatcgtacgtcaacgacaacccaaataaggtatcgtacatcgctgacaacccaaataaggacccaaataaggtatcgt acatcgctgacaacccaaataaggacccaaaaaaggtatcgtacatcgctgacaacccaaataaggtatcgtacatcgct gacaacccaaataaggtatcgcacagcactaccctgacagccaaagtaagctctgggacattaaaaccggttcgtcggtc cgtctgtccgtcagtcacaaaaactttaacctttacttttgaatgatatacactcaagaacaagaataacattgaggtat ctataataaactatggtggaatcataacgaacatcctggtacccgatcgtcaagggaaacaagctgatattaaccttggt tttgatgatatgaatgggtattctgtgaatggaccatatcttggagcactgattggtagatatgctaacagagtggctgg gggacagttcagtatagacggacagacgtacaacctccctataaacaatggacctaatgctttacatggtggtataaaag gttttgacaagagagtgtggcagtcgtcaattgagggtggagacattttggtcctccgttatgtgagtgctgatggagaa gagggttacccaggggaggtcactgtgaaagtaacctatcagttaactgatgacaacgaacttaagatagaatacacagc cacaacaaccaagaaaaccatcattaacctcaccaaccatgcttacttcaacctcggtggtcatgactctggtacagtat ttgaccactttgttacgctgtatgctgatcattacacaccaattgatgcagtctctatacctctaggcagaattgaccct gtgtcagggaccaggtttgacttgcgtaacagacagaatctaggtcaggagattccacaggttcctggggatgtaggctt tgaccataatttttgctttggtaaaacaggctggagaaaatatatggccagagttgatcaccctccgtctggaagatttt tagagatgtacagtacagagcctggtgttcagttttatactgcacattaccttaacgagacaggaaagggcggggccaaa tacggacagtacggagctttctgtttggaagcacaacattaccccgatagtcctaataagccaaatttcccaacaactct acttgccccgggagaagtttacctacagtctacaatgtataagtttggttctgaatag |
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Protein
| Protein ID | pfu_aug1.0_2228.1_66243.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2228.1_66243.t1 MDESKREFSHVKIKSFDYGRKRRNFVVIVCAVAIVITALICVVIYLGVKASQCSEYTVNPSYFGAIVGRYANRVANGQFI IDGATYNIPQIQHWVNSLHGGTKGFDKVSYVNDNPNKVSYIADNPNKDPNKVSYIADNPNKDPKKVSYIADNPNKVSYIA DNPNKVSHSTTLTAKVSSGTLKPVRRSVCPSVTKTLTFTFEXYTLKNKNNIEVSIINYGGIITNILVPDRQGKQADINLG FDDMNGYSVNGPYLGALIGRYANRVAGGQFSIDGQTYNLPINNGPNALHGGIKGFDKRVWQSSIEGGDILVLRYVSADGE EGYPGEVTVKVTYQLTDDNELKIEYTATTTKKTIINLTNHAYFNLGGHDSGTVFDHFVTLYADHYTPIDAVSIPLGRIDP VSGTRFDLRNRQNLGQEIPQVPGDVGFDHNFCFGKTGWRKYMARVDHPPSGRFLEMYSTEPGVQFYTAHYLNETGKGGAK YGQYGAFCLEAQHYPDSPNKPNFPTTLLAPGEVYLQSTMYKFGSE |
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