Gene
| Gene Model ID | pfu_aug1.0_2233.1_58846 |
|---|---|
| Locus | scaffold2233.1 : 32596 ... 51423 : + |
| To GenomeBrowser | scaffold2233.1:32596..51423 |
| Genes list of scaffold | scaffold2233.1 |
| Synonym | pfu_aug2.0_10.1_00009 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2233.1_58846.t1 | 3 | 1 | CUB | 52 | 150 | 1.5e-16 | 60.4 | 1.1e-19 | 5.6e-16 | 58.5 |
| pfu_aug1.0_2233.1_58846.t1 | 1 | 1 | Lectin_C | 193 | 297 | 1.2e-09 | 38.7 | 2.3e-13 | 1.2e-09 | 38.7 |
| pfu_aug1.0_2233.1_58846.t1 | 3 | 2 | CUB | 196 | 209 | 1.5e-16 | 60.4 | 0.45 | 2200.0 | -1.3 |
| pfu_aug1.0_2233.1_58846.t1 | 3 | 3 | CUB | 288 | 338 | 1.5e-16 | 60.4 | 0.42 | 2100.0 | -1.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2233.1_58846.t1 | gi|170587462|ref|XP_001898495.1| | Lectin C-type domain containing protein [Brugia malayi] | 2.0e-11 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2233.1_58846.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2233.1_58846.t1 atggatgactggcgaggaatggaacagtttcctaaccaagcagccaaacatgtcaacttttacatctttgctgtaaccat ctttctggctgtcagagcctactcactgaccttttattgtgtccatggaaacaacgtaaatattcaaggggaggtaaatg gtacaataaagacgctagtgaacggacagtcacattatggagataacatgaactgtacgtggacgttagatgccggagcg gggaacagagttcgtctgaagaccttgacctttgacctccagtatacaccatcttatgtttcctgtaatggaaacgatta tctacaaatacataatggcgatactcagcaaagcgccatcttggggtccttctgcggcaggaacaatccttatgaagtcg tgagtcagggacgatacctttattttaccttctggacaaatagtaaaaacttctacaaccatgctggcatcaccatggat ttccaagtttttgctgatgatgcctgtcccccagagtggagtctattacactctgacaagacttgtgtcaagttgatgtt aaaccctaacacaggtgctgattggtcagattcccagaaatactgtggttacagccaatcaaatttagcaacttatgcaa cacaaagtgtctttgattttgtgcaagcaaatctgtctcggtcaggaaccagtcacgcttgggtaggcttaaatgatgtg ttaaaagaaggtgattacaagtggttgggtggatctacaccttcgtcttcaataagaacaaagtttgacccatacatatc taacaccctgtctgactgtgttatacataattttgtaacggaaaccctggccaccaaacaatgtgatagagatagctacc acttcttgtgccttcagaatcaagatggaagtacggaagtgtataaaacccccgaagctcccacggagaccaccagtaat atgttattggtcaagggaaaatcaaaaaataattttggggaaaaattttttaagttgaaagttatcttcatttttttttc ggaatgcgaggancactcgtag |
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Protein
| Protein ID | pfu_aug1.0_2233.1_58846.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2233.1_58846.t1 MDDWRGMEQFPNQAAKHVNFYIFAVTIFLAVRAYSLTFYCVHGNNVNIQGEVNGTIKTLVNGQSHYGDNMNCTWTLDAGA GNRVRLKTLTFDLQYTPSYVSCNGNDYLQIHNGDTQQSAILGSFCGRNNPYEVVSQGRYLYFTFWTNSKNFYNHAGITMD FQVFADDACPPEWSLLHSDKTCVKLMLNPNTGADWSDSQKYCGYSQSNLATYATQSVFDFVQANLSRSGTSHAWVGLNDV LKEGDYKWLGGSTPSSSIRTKFDPYISNTLSDCVIHNFVTETLATKQCDRDSYHFLCLQNQDGSTEVYKTPEAPTETTSN MLLVKGKSKNNFGEKFFKLKVIFIFFSECEXHS |
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