Gene
| Gene Model ID | pfu_aug1.0_2237.1_51577 |
|---|---|
| Locus | scaffold2237.1 : 37533 ... 41225 : - |
| To GenomeBrowser | scaffold2237.1:37533..41225 |
| Genes list of scaffold | scaffold2237.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2237.1_51577.t1 | 6 | 1 | zf-H2C2_2 | 14 | 25 | 1.1e-15 | 56.9 | 0.0041 | 6.1 | 7.3 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 1 | zf-C2H2 | 16 | 38 | 2.3e-16 | 59.0 | 4.4e-06 | 0.0065 | 16.7 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 1 | zf-C2H2_4 | 16 | 39 | 4.8e-09 | 35.9 | 0.00017 | 0.26 | 11.7 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 2 | zf-H2C2_2 | 30 | 53 | 1.1e-15 | 56.9 | 4.3e-05 | 0.063 | 13.5 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 2 | zf-C2H2 | 44 | 66 | 2.3e-16 | 59.0 | 0.0001 | 0.15 | 12.4 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 2 | zf-C2H2_4 | 44 | 66 | 4.8e-09 | 35.9 | 0.00012 | 0.17 | 12.2 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 3 | zf-H2C2_2 | 58 | 79 | 1.1e-15 | 56.9 | 2.0e-05 | 0.03 | 14.5 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 3 | zf-C2H2 | 72 | 93 | 2.3e-16 | 59.0 | 1.8e-06 | 0.0027 | 17.9 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 3 | zf-C2H2_4 | 72 | 93 | 4.8e-09 | 35.9 | 4.2e-06 | 0.0062 | 16.7 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 4 | zf-H2C2_2 | 88 | 110 | 1.1e-15 | 56.9 | 0.00076 | 1.1 | 9.6 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 4 | zf-C2H2 | 98 | 122 | 2.3e-16 | 59.0 | 5.8e-05 | 0.085 | 13.2 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 4 | zf-C2H2_4 | 99 | 122 | 4.8e-09 | 35.9 | 0.018 | 27.0 | 5.4 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 5 | zf-H2C2_2 | 115 | 139 | 1.1e-15 | 56.9 | 8.6e-09 | 1.3e-05 | 25.2 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 5 | zf-C2H2 | 128 | 150 | 2.3e-16 | 59.0 | 3.3e-07 | 0.00049 | 20.2 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 5 | zf-C2H2_4 | 129 | 149 | 4.8e-09 | 35.9 | 6.7e-06 | 0.01 | 16.1 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 6 | zf-H2C2_2 | 142 | 165 | 1.1e-15 | 56.9 | 3.4e-05 | 0.051 | 13.8 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 6 | zf-C2H2 | 156 | 167 | 2.3e-16 | 59.0 | 0.0014 | 2.1 | 8.8 |
| pfu_aug1.0_2237.1_51577.t1 | 6 | 6 | zf-C2H2_4 | 156 | 165 | 4.8e-09 | 35.9 | 0.25 | 380.0 | 1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2237.1_51577.t1 | gi|344299395|ref|XP_003421371.1| | 1.0e-17 |
Transcript
| Transcript ID | pfu_aug1.0_2237.1_51577.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2237.1_51577.t1 atggctgaagaagggacggctggaagcagcaaacaacagggtttattcaagtgtaaaatctgcctaaaagcctacaggtt caagccttccttaacgcgtcacgtacaaacacacaacgtcaatgccatcaaatgtaaaatgtgccatctattttttagta gtcaagagagatttgataaacacatgcaaacgaaacattctgaggagaaattatgcagcttttgtgggaaaaccttccaa acatcttctctgtattggggtcacatgaaaaggcagcatgaagtctccaaattcatgtgtagtttcgacggttgtggtaa atgtttctatgatcacagcaggtatgtggcacatgtgaacaagcacacaggtatcaaacctttcttctgctcaaattgtc caaagaagttttcctcgaacgagaacctgcgaagacataaaaatgtgtgcataaagaagaagacgtttcagtgtaaggaa tgtgggaggtgcttcatgtcgtccggtgcanctgtcggtccataa |
|
Protein
| Protein ID | pfu_aug1.0_2237.1_51577.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2237.1_51577.t1 MAEEGTAGSSKQQGLFKCKICLKAYRFKPSLTRHVQTHNVNAIKCKMCHLFFSSQERFDKHMQTKHSEEKLCSFCGKTFQ TSSLYWGHMKRQHEVSKFMCSFDGCGKCFYDHSRYVAHVNKHTGIKPFFCSNCPKKFSSNENLRRHKNVCIKKKTFQCKE CGRCFMSSGAXVGP |
|