Gene
| Gene Model ID | pfu_aug1.0_22455.1_47521 |
|---|---|
| Locus | scaffold22455.1 : 2989 ... 7108 : - |
| To GenomeBrowser | scaffold22455.1:2989..7108 |
| Genes list of scaffold | scaffold22455.1 |
| Synonym | pfu_aug2.0_744.1_14519 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_22455.1_47521.t1 | 1 | 1 | Mmp37 | 30 | 278 | 0.0 | 303.4 | 0.0 | 0.0 | 303.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_22455.1_47521.t1 | gi|317575767|ref|NP_001187702.1| | mitochondrial mmp37-like protein [Ictalurus punctatus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_22455.1_47521.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_22455.1_47521.t1 atggcagctatcttgaatgcattccgatttagagctgatgcggtgtggaaaccagcattttcaaggtttgtttctacaga cgtttgtgagagaatactcagtaattttccagatggtattgatatggcatttgcttatggatcagctgtgtttaagcagg aaggacaagatgaagcccagaaaaaatcaaatatgctggactttatattcgtagttaatgatccgttagagtggcacagt caaaatctcaaggcaaacaacagtcattactcatttttgaaatacctcggtccaaaagccattgcagacattcaaactaa gtatggtgcaggagtttactttaattctaaggtatttgtagacggcagggaaatcaaatatggtgtattaagcacgtcgg aacttgtttcagatttgtatgactggaaatcgttgtacatcagtggacggcttcataaacctgcaaaaataatcattcgg ccagaaaagtccgatatcttgactgcaatgcaagtgaatttacaaaatgcgttacatgcatcattactaatgctcccaga atatttcacggaggagcaactttaccttaaaatcacaagtctgtcatatgacggggactttagaatgagattcggggaaa acaagaacaaggtatcaaatattgtgtcgccaaatatgccttatttcagacagctttatcagcacatctggtcgaaggaa cctcatttacattgggacagtgcacagaattgttttgaacaataccccaatcatgttacacagtttcaccatcttaatct gcttcctaaattagntccaacagaatttactaaaacatcatcagaaaaacgtcaagaaatccttggacattga |
|
Protein
| Protein ID | pfu_aug1.0_22455.1_47521.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_22455.1_47521.t1 MAAILNAFRFRADAVWKPAFSRFVSTDVCERILSNFPDGIDMAFAYGSAVFKQEGQDEAQKKSNMLDFIFVVNDPLEWHS QNLKANNSHYSFLKYLGPKAIADIQTKYGAGVYFNSKVFVDGREIKYGVLSTSELVSDLYDWKSLYISGRLHKPAKIIIR PEKSDILTAMQVNLQNALHASLLMLPEYFTEEQLYLKITSLSYDGDFRMRFGENKNKVSNIVSPNMPYFRQLYQHIWSKE PHLHWDSAQNCFEQYPNHVTQFHHLNLLPKLXPTEFTKTSSEKRQEILGH |
|