Gene
| Gene Model ID | pfu_aug1.0_225167.1_35845 |
|---|---|
| Locus | scaffold225167.1 : 1 ... 684 : + |
| To GenomeBrowser | scaffold225167.1:1..684 |
| Genes list of scaffold | scaffold225167.1 |
| Synonym | pfu_aug2.0_366.1_20665 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pf-vasa-like protein |
| Description | reciprocal BLASTP best hit to NCBI Accession AAR37337.1 (Crassostrea gigas vasa-like protein). DEAD/DEAH box domain. Connects to pfu_aug1.0_120090.1_21080. |
| mRNA evidence |
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-vasa-like |
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-vasa-like |
| Description | N-terminal part of DEAD-box helicase domain. Reciprocal BLAST best hit to NCBI AAR37337 (Crassostrea gigas). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_225167.1_35845.t1 | 1 | 1 | DEAD | 71 | 141 | 3.9e-18 | 65.5 | 6.7e-22 | 5.0e-18 | 65.1 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_225167.1_35845.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_225167.1_35845.t1 accgaccagcaccatacgtacctcctgctccatcagaggatgagaacgagattttctgtgcaatgcaaaagggaattaac tttgataaatatgacaagattccagtagaagtcactggtggagatccacctccctgtataaagaactttgaggaggcagg cttggcagattccttccttaccaacgttaaaaaagccaatttcgagaagcctactccagtacagaaatattctattccga taatcatggcgggtagagaccttatggcctgtgcacagactggatcgggtaaaacggccgcgttcttactgcctgtactg acaggaatgacaaaatctggattgaacagtagtagcttctcccaggtccaagaaccacaagccttggtgattgctcctac aagagagttggctgtacagatctatatggac |
|
Protein
| Protein ID | pfu_aug1.0_225167.1_35845.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_225167.1_35845.t1 RPAPYVPPAPSEDENEIFCAMQKGINFDKYDKIPVEVTGGDPPPCIKNFEEAGLADSFLTNVKKANFEKPTPVQKYSIPI IMAGRDLMACAQTGSGKTAAFLLPVLTGMTKSGLNSSSFSQVQEPQALVIAPTRELAVQIYMD |
|