Gene
| Gene Model ID | pfu_aug1.0_2295.1_01050 |
|---|---|
| Locus | scaffold2295.1 : 163532 ... 167775 : - |
| To GenomeBrowser | scaffold2295.1:163532..167775 |
| Genes list of scaffold | scaffold2295.1 |
| Synonym | pfu_aug2.0_10.1_00029 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2295.1_01050.t1 | 1 | 1 | Neur_chan_LBD | 30 | 238 | 0.0 | 187.6 | 0.0 | 0.0 | 186.8 |
| pfu_aug1.0_2295.1_01050.t1 | 1 | 1 | Neur_chan_memb | 246 | 411 | 6.6e-22 | 78.5 | 9.0e-24 | 4.5e-20 | 72.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2295.1_01050.t1 | gi|323276597|ref|NP_001190978.1| | nicotinic acetylcholine receptor subunit precursor [Ciona intestinalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2295.1_01050.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2295.1_01050.t1 atgaagtggcagatacttctgtgtttttgctttatacttataaaagtccagggacaagatactggcgatttcgaatatga ggatgctaaagctctctacgattacctgacggaaaataaaaccaatgcgaacattgtaccgatatgtaagcggaatcaaa aagtgttggttacggtagaactggccgtgagagaacttgtggaattagacgaaaagaaacaaatcctttgcgcaaaagtt tggttgagactcgcatggaatgactgttctctgaagtggaacccagcagatttcggtaatttgacaaaaatcgtgatgcc gtatgaaaacgtttggcaaccggacataacactgtatgaaggagcgtcagaggaggcgaatatgcccgataaaaccgaat ataaagcgtgggtgcacagcaacggtcgtgtgacatataacttcccgtcagtcacgacgacaacttgccgaatcgacgtg acttatttccccttcgattatcagaattgtagcttgaaattcggttcttggaatttcgacggaaatcaaatagactttcg cctccagaattctgaagcggacactagtgcattcgtgatacataacgaatgggagttagtcagtgctcatggaatccgac acgaaagttattacgagttaagtcccgaaccttacccggatataacgtattacatagtgctagcaaggcgaccaaagttc tactttgtgacactattctttccatcgatcgttattttgggtctttcgttgctcggcttcatgctcccgccggagtcagg ggagaaaatcaacatccagatcacggtgctgctgtctatctcggtgttcttactcctcgtacaagacaaactaccgtgct cctctcagactttcccgcaaattgggatttacttctctatagccatgctgctcacgtgcttatcctgcgttatgacgtca atcgttatgtatattcacctcaaacaagagaccacggccaaaccacccccaagatggctccgaaaatccgtagaggtcat gacattaaatatatcatgcaaaagacgacgaaagccacgcaataccgatgacgtcaaagtgaaaagcatccgggttctag agggcgacgtcgattcgttcacaaacatcggatttgtatcggaggaaaatggtgacgtgaaacataatggccaagttgcc gatgttgacttgccagaatacaaggaaagagaatcgtccacgagcagttatagcctaagtcacgaggaggagaaagagtg ggagttactgtccttggctatagatagactattcatgcttttgtactttattttcatggtactgaatatctgcgtgtatt tattctggaactggtccgaacttggacgcttttggcaataa |
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Protein
| Protein ID | pfu_aug1.0_2295.1_01050.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2295.1_01050.t1 MKWQILLCFCFILIKVQGQDTGDFEYEDAKALYDYLTENKTNANIVPICKRNQKVLVTVELAVRELVELDEKKQILCAKV WLRLAWNDCSLKWNPADFGNLTKIVMPYENVWQPDITLYEGASEEANMPDKTEYKAWVHSNGRVTYNFPSVTTTTCRIDV TYFPFDYQNCSLKFGSWNFDGNQIDFRLQNSEADTSAFVIHNEWELVSAHGIRHESYYELSPEPYPDITYYIVLARRPKF YFVTLFFPSIVILGLSLLGFMLPPESGEKINIQITVLLSISVFLLLVQDKLPCSSQTFPQIGIYFSIAMLLTCLSCVMTS IVMYIHLKQETTAKPPPRWLRKSVEVMTLNISCKRRRKPRNTDDVKVKSIRVLEGDVDSFTNIGFVSEENGDVKHNGQVA DVDLPEYKERESSTSSYSLSHEEEKEWELLSLAIDRLFMLLYFIFMVLNICVYLFWNWSELGRFWQ |
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