Gene
| Gene Model ID | pfu_aug1.0_22984.1_54865 |
|---|---|
| Locus | scaffold22984.1 : 23 ... 27828 : + |
| To GenomeBrowser | scaffold22984.1:23..27828 |
| Genes list of scaffold | scaffold22984.1 |
| Synonym | pfu_aug2.0_2495.1_18839 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_22984.1_54865.t1 | 4 | 1 | TSP_1 | 94 | 137 | 3.6e-36 | 123.0 | 6.9e-14 | 2.6e-10 | 40.2 |
| pfu_aug1.0_22984.1_54865.t1 | 4 | 2 | TSP_1 | 145 | 193 | 3.6e-36 | 123.0 | 2.4e-17 | 8.8e-14 | 51.3 |
| pfu_aug1.0_22984.1_54865.t1 | 4 | 3 | TSP_1 | 202 | 230 | 3.6e-36 | 123.0 | 2.9e-07 | 0.0011 | 19.0 |
| pfu_aug1.0_22984.1_54865.t1 | 4 | 4 | TSP_1 | 270 | 319 | 3.6e-36 | 123.0 | 2.7e-10 | 9.9e-07 | 28.7 |
| pfu_aug1.0_22984.1_54865.t1 | 2 | 1 | Laminin_G_2 | 357 | 471 | 5.0e-11 | 42.7 | 1.0e-07 | 0.00037 | 20.5 |
| pfu_aug1.0_22984.1_54865.t1 | 2 | 2 | Laminin_G_2 | 536 | 657 | 5.0e-11 | 42.7 | 2.1e-07 | 0.00076 | 19.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_22984.1_54865.t1 | gi|260821553|ref|XP_002606097.1| | hypothetical protein BRAFLDRAFT_88007 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_22984.1_54865.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_22984.1_54865.t1 atgagtaatgaccaggtaaattctccaacaactcgaagaacatggaagtcgctggctggtcgttgtgtggtcgctgaagg gaagcaaaatctagagaaagttctatccatgtcaaggaatacaaagaagatgcctggagaaataactgtaagcattggtg ccacaaacacaacaaagaatgatggtagatctatttcttttagagagcaggaccatccagcgtatggagatccttacagt gttatactgaatcctcggcaagagattacatatgagatgtggtctgtttggacagcctgctccaagtcatgtggctcggg gatacgacttagaacaaggaactgtaaagtgaaggagaagccatgttacggggaggtgatacagaggcagtactgtaaca ctattgattgtcccatccctggagggtggggagattggcaagcctggacaccgtgcagtgtaacgtgtaggactggtata cagaaaaggtaccgtaggtgtgacagtcctctacctcaaaatggtggcacatgtctaggacaggcagaaaaagaaaggaa atgcaaaatgaaggagtgtaaagctgaaagcttcagttatggggaatgggagaaatggtcaaaatgttccaaagaatgcg gaatgggaactaaaacacgaaagagatcttgccaagttctgtcatccgatcctgcaacaaagcaaataatggataagagt aatgtcagtaagacatgttctaaaactggatcccagatgacacatacttgtaatcctatgccttgtccagtgaatggtaa gtgggcaaattggggtacttggtcaacatgtaatgaagcttgtggactggggcagcgatacagggatagggcgtgtactg atccagctcctgtcaatggtggatctaattgtgaaggatcaggatcagatattgctcactgttttacctcaccatgtcaa gaatcttctctggttggtgtaaggtttaaaggtactggatttttactgtataatccgagacacaaggcttcccattttct ctccctttacgtattattgacaccaaagacaaagaatggtatgatcttacagagattcaggggatgtaagtctggtatct gttcccacaatgtcaccttgtctttacataatggtgtgccatggctagttgtcaaagatggaaaacatcaactggacttg atcggaaataaacatgtacaggacagcatatttatttacgtccaaggaaaagatgctacaatgcgagttgatgatggaaa acatgtgattgccaagtttactccagagctgaatgatctattaaattatgatgccaaaatgattgttggtttggacaaga ataaaagtgcagaacaaggttacaaaggtgatattgaaagtctgcgagtgaacttccgtacacttagccttgtaaaatca cccagctggaagggatatggatcaccaatcaaatcagcacatataaatcaattcaaactaaaaccctactcaggataccc tgtatttactggtcgtagcttcatgaaatcaccatttccagagttgtctcatctttcattaaagttgacattttatgcca ttagccttgatggggtgttattttttaattatggcttacatcgtggatcatacacttacatggtcataaacaatggtgca ctaagggtgtgtttacaatgtgccaatattaagaaaccagtatgtgaagacatagatataattcaatcccgtgtgtggta ccacattacagtctttatatcaggcaatgcagctagaataagacttaataacaacactgcggtacagttaacatctgttg gtccttcgtacagaatggagtctcccgtgtggtttggtgttggtgagaaactagataaaattatactgcagacactaaca ggacagaagtctggcctccatggtgtcatccatgatatcaatatcaatgagagagtagacgaggttgtggagcgcactag cagcattgtgacactgaaatgtgactttacacagtactatagcagagataaacacgctgctgtggagtggttccatggtg atagacgagtcaaatattcttctgacagaaaaattacaaaaagacttcctggagtaaggaaaatagggtcacttgaactg agaggacctcatcatcaagggatttacctatgtgctgtaagacataatggggtgttgacagtccaacatgcctttgttgt tatccgttataacgtcaaacataatagagtagatggctctactacagctttctgctttctatacaaatacagaatagaat tgtcgtcataccttaattttataagtgaaaaggaaatagtccaggatgaggaacttgtcacacctgaaggagataaagaa ggagatgaacttgacaatgatgacgagtttgaatctattgtcagctctggacttatagcagataaaaaagaatcaccaat ggctttagacttttctgcaagatccattccgcacacagtaaagagtgggaatgacttcattgtcccacaatcatctgtta acattcagagaacaattcccaagttttcatctgagaggattcaaatgcaacaaagctctggtagaatcaggcctgaaaga aaagagtcgccagtcgctgtaaatttttcatcaagatctataccacatacaataaaaaacgacttcattgtcccgagatc atcaattgacatgcaaagaacaattcccaagttttcatctgaggaaattcaattgctacaaaacaaaagtcaagttatta accaaacactaccagtaacactctccaaaatttcaccagagaaacgagagtctctgtcagcggttcagaaacgtggttca cgttcccaacaacaaacagttcctccaacggtctctcccatctctccgctgagccctacaaaagtagcaagcaaccaagg aagcctctctaagacctcagaccttcctcctcctccctcatcagtcacacaactaggtttccagagaaaaccatcatctt attcaaagcttaatcctcctcttcctccctccatgccacctgatgtaggactccaaggaaagctgtcttcacattctaag ctgcctccttcatccacctccatgccactagatgtaggactccagggaaacatgtcttcacattctaagctgcctcctcc acccacttctgtgccaccagatgtaggactccagggaaacatgtcttcacattctaagctgcctcctccaccgccacaga tatcctctgatggatcaacaacttcaactaaaaggtaa |
|
Protein
| Protein ID | pfu_aug1.0_22984.1_54865.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_22984.1_54865.t1 MSNDQVNSPTTRRTWKSLAGRCVVAEGKQNLEKVLSMSRNTKKMPGEITVSIGATNTTKNDGRSISFREQDHPAYGDPYS VILNPRQEITYEMWSVWTACSKSCGSGIRLRTRNCKVKEKPCYGEVIQRQYCNTIDCPIPGGWGDWQAWTPCSVTCRTGI QKRYRRCDSPLPQNGGTCLGQAEKERKCKMKECKAESFSYGEWEKWSKCSKECGMGTKTRKRSCQVLSSDPATKQIMDKS NVSKTCSKTGSQMTHTCNPMPCPVNGKWANWGTWSTCNEACGLGQRYRDRACTDPAPVNGGSNCEGSGSDIAHCFTSPCQ ESSLVGVRFKGTGFLLYNPRHKASHFLSLYVLLTPKTKNGMILQRFRGCKSGICSHNVTLSLHNGVPWLVVKDGKHQLDL IGNKHVQDSIFIYVQGKDATMRVDDGKHVIAKFTPELNDLLNYDAKMIVGLDKNKSAEQGYKGDIESLRVNFRTLSLVKS PSWKGYGSPIKSAHINQFKLKPYSGYPVFTGRSFMKSPFPELSHLSLKLTFYAISLDGVLFFNYGLHRGSYTYMVINNGA LRVCLQCANIKKPVCEDIDIIQSRVWYHITVFISGNAARIRLNNNTAVQLTSVGPSYRMESPVWFGVGEKLDKIILQTLT GQKSGLHGVIHDININERVDEVVERTSSIVTLKCDFTQYYSRDKHAAVEWFHGDRRVKYSSDRKITKRLPGVRKIGSLEL RGPHHQGIYLCAVRHNGVLTVQHAFVVIRYNVKHNRVDGSTTAFCFLYKYRIELSSYLNFISEKEIVQDEELVTPEGDKE GDELDNDDEFESIVSSGLIADKKESPMALDFSARSIPHTVKSGNDFIVPQSSVNIQRTIPKFSSERIQMQQSSGRIRPER KESPVAVNFSSRSIPHTIKNDFIVPRSSIDMQRTIPKFSSEEIQLLQNKSQVINQTLPVTLSKISPEKRESLSAVQKRGS RSQQQTVPPTVSPISPLSPTKVASNQGSLSKTSDLPPPPSSVTQLGFQRKPSSYSKLNPPLPPSMPPDVGLQGKLSSHSK LPPSSTSMPLDVGLQGNMSSHSKLPPPPTSVPPDVGLQGNMSSHSKLPPPPPQISSDGSTTSTKR |
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