Gene
| Gene Model ID | pfu_aug1.0_2307.1_22940 |
|---|---|
| Locus | scaffold2307.1 : 29487 ... 39825 : - |
| To GenomeBrowser | scaffold2307.1:29487..39825 |
| Genes list of scaffold | scaffold2307.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2307.1_22940.t1 | 7 | 1 | Ank_5 | 161 | 205 | 7.4e-34 | 115.0 | 3.1e-05 | 0.066 | 13.4 |
| pfu_aug1.0_2307.1_22940.t1 | 4 | 1 | Ank_4 | 168 | 218 | 2.3e-38 | 129.8 | 1.9e-08 | 4.0e-05 | 24.0 |
| pfu_aug1.0_2307.1_22940.t1 | 3 | 1 | Ank_2 | 169 | 261 | 0.0 | 171.6 | 5.6e-21 | 1.2e-17 | 64.0 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 1 | Ank | 171 | 195 | 0.0 | 156.8 | 0.043 | 91.0 | 3.1 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 1 | Ank_3 | 171 | 188 | 3.0e-37 | 122.9 | 0.38 | 800.0 | 0.8 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 2 | Ank_5 | 184 | 223 | 7.4e-34 | 115.0 | 3.1e-06 | 0.0066 | 16.6 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 2 | Ank | 198 | 225 | 0.0 | 156.8 | 0.00012 | 0.25 | 11.2 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 2 | Ank_3 | 198 | 224 | 3.0e-37 | 122.9 | 0.00012 | 0.26 | 11.6 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 3 | Ank_5 | 232 | 265 | 7.4e-34 | 115.0 | 6.9e-09 | 1.5e-05 | 25.1 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 3 | Ank | 233 | 262 | 0.0 | 156.8 | 2.2e-13 | 4.6e-10 | 38.7 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 3 | Ank_3 | 233 | 260 | 3.0e-37 | 122.9 | 5.0e-09 | 1.1e-05 | 25.2 |
| pfu_aug1.0_2307.1_22940.t1 | 4 | 2 | Ank_4 | 234 | 295 | 2.3e-38 | 129.8 | 5.3e-14 | 1.1e-10 | 41.6 |
| pfu_aug1.0_2307.1_22940.t1 | 3 | 2 | Ank_2 | 265 | 336 | 0.0 | 171.6 | 8.7e-20 | 1.8e-16 | 60.2 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 4 | Ank_5 | 267 | 301 | 7.4e-34 | 115.0 | 3.3e-07 | 0.00071 | 19.7 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 4 | Ank | 275 | 302 | 0.0 | 156.8 | 5.7e-11 | 1.2e-07 | 31.1 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 4 | Ank_3 | 275 | 302 | 3.0e-37 | 122.9 | 2.5e-09 | 5.2e-06 | 26.1 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 5 | Ank_5 | 294 | 341 | 7.4e-34 | 115.0 | 8.5e-09 | 1.8e-05 | 24.8 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 5 | Ank | 308 | 338 | 0.0 | 156.8 | 1.3e-10 | 2.8e-07 | 29.9 |
| pfu_aug1.0_2307.1_22940.t1 | 4 | 3 | Ank_4 | 308 | 362 | 2.3e-38 | 129.8 | 1.3e-13 | 2.7e-10 | 40.4 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 5 | Ank_3 | 308 | 335 | 3.0e-37 | 122.9 | 4.1e-08 | 8.6e-05 | 22.4 |
| pfu_aug1.0_2307.1_22940.t1 | 3 | 3 | Ank_2 | 324 | 397 | 0.0 | 171.6 | 7.1e-20 | 1.5e-16 | 60.4 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 6 | Ank_5 | 327 | 375 | 7.4e-34 | 115.0 | 1.8e-08 | 3.9e-05 | 23.7 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 6 | Ank | 342 | 369 | 0.0 | 156.8 | 1.3e-08 | 2.7e-05 | 23.7 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 6 | Ank_3 | 342 | 369 | 3.0e-37 | 122.9 | 9.2e-07 | 0.002 | 18.2 |
| pfu_aug1.0_2307.1_22940.t1 | 4 | 4 | Ank_4 | 343 | 395 | 2.3e-38 | 129.8 | 1.6e-11 | 3.3e-08 | 33.8 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 7 | Ank_5 | 361 | 398 | 7.4e-34 | 115.0 | 1.3e-06 | 0.0027 | 17.9 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 7 | Ank | 374 | 397 | 0.0 | 156.8 | 1.1e-05 | 0.024 | 14.4 |
| pfu_aug1.0_2307.1_22940.t1 | 7 | 7 | Ank_3 | 374 | 398 | 3.0e-37 | 122.9 | 0.00044 | 0.93 | 9.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2307.1_22940.t1 | gi|348516776|ref|XP_003445913.1| | PREDICTED: ankyrin repeat and KH domain-containing protein 1 isoform X1 [Oreochromis niloticus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2307.1_22940.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2307.1_22940.t1 atgatgcagaatgttgcccaagaagatagcaaatctcaaaagaatgaaataaaaactgtcgaaatcgaacacggtagtca gacagggtcgtatccatcaatagaaaaatctgaagccttgccgacatccccgtcaacatttggtccagatattagcgacg atgatgaggtatcagatgttggatcatttatcatggaccatgatatcgatgatgaagaccccgaccttgaaccttctaaa ttcttacttcccactgcagagggcatggatgccagtagtatgccatctatagacccagagacacatgctagattggaagc tttattagaggctgcaggtattggtaaattatctacagcagacggtaaagcattaactgaccctgaagttttacgtaaat tgacatcatctgttagctgtgcgcttgacgaagctgcccaagctttacatagaatgagagccgaacagcaaggacaagtc actggtcctgagggatccaggtcgcttgctgaggcatgcagtgacggtgacgtacctaccgtccggaaactgctacacga aggtggaagtgtacatgaaaccaccgaagaaggagagagtcttttgtcgctggcatgctcagcaggctactatgagctag ctcaagttttattggcaatgaaggcaaatgtagaggacagaggcattaagggggactgtacccctcttatggaagcagcc agtgggggttacgtggacattgtcaaactcctaattgattatggtgccgatgtcaatgcccagtcttctgcaggtgccat tgtacatgcccagacaggaacgggtgatacggcgttaacttatgcttgtgagaatggtcatacggatgtagctgaagcac tgctacagcatggtgctgaattggagcacgagtctgagggagggaggacacctctgatgaaagctgccagggcaggatac ttatgcactgtccagttccttatcagtaaaggagctgatgttaaccgtaccaccaccactaacgaccatacagtattgtc gctggcctgtgccgggggtcacctagctgtagtggagctactcctggcccatggggctgatcctgctcataaactgaagg atggatcaacaatgatcatagaggcagccaaaggtggacacacgcaagtggtcaagcttctgttggagtatcccaatcgg gtgttgatgaactcgccagatttaactcagctcactgatccaaacttgacggaggtaagaaatatactgctttgctctta ttga |
|
Protein
| Protein ID | pfu_aug1.0_2307.1_22940.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2307.1_22940.t1 MMQNVAQEDSKSQKNEIKTVEIEHGSQTGSYPSIEKSEALPTSPSTFGPDISDDDEVSDVGSFIMDHDIDDEDPDLEPSK FLLPTAEGMDASSMPSIDPETHARLEALLEAAGIGKLSTADGKALTDPEVLRKLTSSVSCALDEAAQALHRMRAEQQGQV TGPEGSRSLAEACSDGDVPTVRKLLHEGGSVHETTEEGESLLSLACSAGYYELAQVLLAMKANVEDRGIKGDCTPLMEAA SGGYVDIVKLLIDYGADVNAQSSAGAIVHAQTGTGDTALTYACENGHTDVAEALLQHGAELEHESEGGRTPLMKAARAGY LCTVQFLISKGADVNRTTTTNDHTVLSLACAGGHLAVVELLLAHGADPAHKLKDGSTMIIEAAKGGHTQVVKLLLEYPNR VLMNSPDLTQLTDPNLTEVRNILLCSY |
|