Gene
| Gene Model ID | pfu_aug1.0_2312.1_51616 |
|---|---|
| Locus | scaffold2312.1 : 37136 ... 43052 : + |
| To GenomeBrowser | scaffold2312.1:37136..43052 |
| Genes list of scaffold | scaffold2312.1 |
| Synonym | pfu_aug2.0_1088.1_28041 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2312.1_51616.t1 | 1 | 1 | zf-C3HC4_3 | 29 | 82 | 4.7e-07 | 29.3 | 3.5e-10 | 4.7e-07 | 29.3 |
| pfu_aug1.0_2312.1_51616.t1 | 2 | 1 | zf-RING_2 | 30 | 82 | 2.4e-07 | 30.4 | 1.8e-10 | 2.4e-07 | 30.4 |
| pfu_aug1.0_2312.1_51616.t1 | 1 | 1 | zf-C3HC4 | 31 | 81 | 2.5e-08 | 33.4 | 1.8e-11 | 2.5e-08 | 33.4 |
| pfu_aug1.0_2312.1_51616.t1 | 1 | 1 | zf-C3HC4_2 | 31 | 81 | 1.0e-07 | 31.8 | 7.6e-11 | 1.0e-07 | 31.8 |
| pfu_aug1.0_2312.1_51616.t1 | 2 | 1 | zf-RING_5 | 31 | 82 | 4.0e-06 | 26.4 | 3.0e-09 | 4.0e-06 | 26.4 |
| pfu_aug1.0_2312.1_51616.t1 | 1 | 1 | zf-RING_UBOX | 31 | 60 | 9.5e-06 | 25.2 | 7.1e-09 | 9.5e-06 | 25.2 |
| pfu_aug1.0_2312.1_51616.t1 | 2 | 2 | zf-RING_5 | 121 | 155 | 4.0e-06 | 26.4 | 0.26 | 350.0 | 1.0 |
| pfu_aug1.0_2312.1_51616.t1 | 2 | 2 | zf-RING_2 | 196 | 219 | 2.4e-07 | 30.4 | 0.082 | 110.0 | 2.7 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2312.1_51616.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2312.1_51616.t1 atggcgcaatccgtgactgctgacgaggcgaagcaagacgattcactcgataattctggtgattcagggattcgaaaaga tcttacaacatgttcgatttgtttcgaaacattcaaaaggccaaaatatttgccgtgcttgcactcttattgtgaatcat gcttacaatcttacattgactccacaaaactgaaagtgaaagaagactccggggaaattccaggaattgtctgtccactg tgtaggctgttcgtaaagttaccaggcggatgtgagtggaatgagtgggcatattcgttgccaatgaatcatttactagc atcagtaattgatgctgatactacaaaaaagtccaaaatatgtaaagcatgtgctagagaaaatgaaagaaaaagtgcca tatgtgctacggcatggtgcatggattgtgcagaggggttctgtgaactgtgtgagcgccaacaccgtaaattcaagtat ggggaaaatcataaagtggttgacattggagacatgcttcaattgcagcagtctattatttcacaatcacatgaaattat gtgtcaatctcatcccaaaaaggcattggaggcttattgtgaagatcattctgttgtgtgttgtttaacatgtgccatgc tgaatcacaggaaatgtgaccaagtagggacaatagaaaatgcagtccaagaaaagaagaaaaagggagaggatactgcc ctgaaagaatcatttgttggcatgaaaaaatcacttgcatcagcaaaggaagcagttgaagggaatctactagcattgag agggcaagtatctgctattgagtcaagtatccaccaagaatatgatgccttcatcaaacatggacaaagacttagagatg agaaacttgaggacctcaggtcactagaaaagaccctcattccagcagaagagagtaaacgtgatgaaatcttgggcaaa atatgtgcattagaaaatgacttgaagctcctcgatacaactgtagatttagcacctgatgcacagtttcttctgaattt caatcaactgctggagcagaagtcagtgatacaggtatttcttgaaaaagaggtactagaacaaaccaaactatgtgaaa tgaagtttgagaaatcatcagcgttgttcagtatgtctggtgtgatggatagctatggagagatgattgttgaaaaaagg aatttggcatgtggtcacagtgatgtcatcgtagaccctggtcccagtattgttgatctcgcacaagtgaaaccaaagct gatgcatacagtaccccttgaaggtaaaggaattataggaatttgcatttttggcgacaattttgtgattgtttctaaag aatctcaagcagttgaattactcaacagtaaaggaacctgtctatcttcgatgatgttggatagcaatgcagttgacctg aagatgttcaacaaatccgaaggtgcagttttggagaagaaaaagataacgatcttcaaagtacttgaagaaaattcact gcataggatttcagagctcagtcttcaagaggatgctgatgcaatttcttatcatgatcctcacctgtacatagcagcta agagtgaaataacagtaaaagacataaacatgaaaacagttagaaagataagattatattatcctgtagttcagtttgaa gtccaatcaggtggaaatattatttttagcaatactgagtttgatgacatattttgtattagaccagatgcatctgatgt atggcaatatagtcatgaaaatttaactcatactgagggagttgctttagatagcactggaaatgttttggtttgtggca agaattcatgcaatgtttaccaccttacacaaaatggtgaatttcacagtgtgtttctttcactaagtgaaatgcagtct tctccaaagtgcattagcatcaataagtatgaacaaaaactagctgttggatgtgaaaatgctgtattggtttatgagat tagataa |
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Protein
| Protein ID | pfu_aug1.0_2312.1_51616.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2312.1_51616.t1 MAQSVTADEAKQDDSLDNSGDSGIRKDLTTCSICFETFKRPKYLPCLHSYCESCLQSYIDSTKLKVKEDSGEIPGIVCPL CRLFVKLPGGCEWNEWAYSLPMNHLLASVIDADTTKKSKICKACARENERKSAICATAWCMDCAEGFCELCERQHRKFKY GENHKVVDIGDMLQLQQSIISQSHEIMCQSHPKKALEAYCEDHSVVCCLTCAMLNHRKCDQVGTIENAVQEKKKKGEDTA LKESFVGMKKSLASAKEAVEGNLLALRGQVSAIESSIHQEYDAFIKHGQRLRDEKLEDLRSLEKTLIPAEESKRDEILGK ICALENDLKLLDTTVDLAPDAQFLLNFNQLLEQKSVIQVFLEKEVLEQTKLCEMKFEKSSALFSMSGVMDSYGEMIVEKR NLACGHSDVIVDPGPSIVDLAQVKPKLMHTVPLEGKGIIGICIFGDNFVIVSKESQAVELLNSKGTCLSSMMLDSNAVDL KMFNKSEGAVLEKKKITIFKVLEENSLHRISELSLQEDADAISYHDPHLYIAAKSEITVKDINMKTVRKIRLYYPVVQFE VQSGGNIIFSNTEFDDIFCIRPDASDVWQYSHENLTHTEGVALDSTGNVLVCGKNSCNVYHLTQNGEFHSVFLSLSEMQS SPKCISINKYEQKLAVGCENAVLVYEIR |
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