Gene
| Gene Model ID | pfu_aug1.0_23302.1_54889 |
|---|---|
| Locus | scaffold23302.1 : 7476 ... 27671 : + |
| To GenomeBrowser | scaffold23302.1:7476..27671 |
| Genes list of scaffold | scaffold23302.1 |
| Synonym | pfu_aug2.0_2705.1_18897 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | aldehyde dehydrogenase family 8-like |
| Description | NCBI BLASTP hit to ref|XP_003440690.1| |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23302.1_54889.t1 | 2 | 1 | Aldedh | 1 | 269 | 0.0 | 341.7 | 0.0 | 0.0 | 304.9 |
| pfu_aug1.0_23302.1_54889.t1 | 2 | 2 | Aldedh | 270 | 313 | 0.0 | 341.7 | 1.8e-13 | 2.7e-09 | 35.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23302.1_54889.t1 | gi|348506285|ref|XP_003440690.1| | PREDICTED: aldehyde dehydrogenase family 8 member A1-like isoformX1 [Oreochromis niloticus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_23302.1_54889.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23302.1_54889.t1 atgatgaagattgctgagattttagagtctcggttagatgagtttgccaaggccgagtctcgagatcagggtaaaccagt atggctcgctaaagctgtagatataccaagggccgtacataacatgaggagcttcgctacgtcaatactacatgaagtta acaaatcgacagtcttagatgctatggatgctgttaactacaccctacgtcaaccagtgggcgtggcaggtctgatcagt ccctggaacctacccatgtatctactgacgtttaaaattgctccagccatagcctctggtaatacagtggtggctaagcc tagcgagatgacctctgttactgcttggatgttctgtaaagtccttcaagatgcaggtttaccaaaaggagtgatcaatt ttgtgtttggagttggtccccgtgctggagaggccatcgtcaaacacccaggagtgcctctggtttcttttactggagga acagctacagcaaagaggctccgaatgacagctgctccattttctaagaaattatctcttgagcttggaggaaagaaccc ggcagtgattttcagtgattgtgatttacaaaaatgtatagacaccactatcagatctagttttatgaaccagggagaga tttgtttgtgtacaagtcgtatatacgtacagaaagacctgtacctgactttcctagaaaaattcatagaagctacaaaa aaattaatcgtaggaaatccaaaagagagcagcacattctgtggagcgttaattagcaaagagcacctagcaaaggtcaa aggttacgcaggaaccatttgggctaactgctggctggtccgtgatctgaatatgccgtttggaggaaccaaagaatctg gtgtcggaagggagggaaactttgactccatggacttctttacagaacaaaaaacgatctgtgtcaaactttga |
|
Protein
| Protein ID | pfu_aug1.0_23302.1_54889.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23302.1_54889.t1 MMKIAEILESRLDEFAKAESRDQGKPVWLAKAVDIPRAVHNMRSFATSILHEVNKSTVLDAMDAVNYTLRQPVGVAGLIS PWNLPMYLLTFKIAPAIASGNTVVAKPSEMTSVTAWMFCKVLQDAGLPKGVINFVFGVGPRAGEAIVKHPGVPLVSFTGG TATAKRLRMTAAPFSKKLSLELGGKNPAVIFSDCDLQKCIDTTIRSSFMNQGEICLCTSRIYVQKDLYLTFLEKFIEATK KLIVGNPKESSTFCGALISKEHLAKVKGYAGTIWANCWLVRDLNMPFGGTKESGVGREGNFDSMDFFTEQKTICVKL |
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