Gene
| Gene Model ID | pfu_aug1.0_23302.1_54891 |
|---|---|
| Locus | scaffold23302.1 : 32588 ... 38947 : - |
| To GenomeBrowser | scaffold23302.1:32588..38947 |
| Genes list of scaffold | scaffold23302.1 |
| Synonym | NA |
Manual annotation
| Study field | Metabolism |
|---|---|
| Gene name | amylase-like |
| Description | best hit to Pinctada maxima amylase [HM989014.1] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23302.1_54891.t1 | 1 | 1 | Alpha-amylase_C | 101 | 183 | 6.4e-14 | 51.8 | 1.5e-17 | 1.1e-13 | 51.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23302.1_54891.t1 | gi|336454166|gb|AEI58897.1| | amylase [Pinctada maxima] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_23302.1_54891.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23302.1_54891.t1 gtggtgtgctgactcactttgaacacagagcatacaagatggccacggcttttatgttggcacatccttacgggtttacc agggttatgagcagctatgactggccaagaaatattgtgaacggtgaggataagaacaactggtacggtccaccacataa cggtgatatgagtatcaaggggagatcaatcaaagccgacctttcctgtggaaatggatggacatgtgagcatagatggc gccagatttacaatatggtggccttcaggaaccttgtgtttggaaccactgtcaacaactggtgggataatggaaacaaa gctatcgctttctccagaggaaaccgtggctttattgtcataaatgatgacacagtagatgtgaatgctaatctacaaac aggactcccgcagggaacttattgtgatgtcatttccggaaattatgagaacggcgcatgtaccggaaatgaggtgcatg tgggtggagatgggcgtgcccatttccatatcagtcaccagagcgaggatcccgttgtggcaatacatataggtgcaaag aaaggaagtccaaagaaagtcatcctttaa |
|
Protein
| Protein ID | pfu_aug1.0_23302.1_54891.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23302.1_54891.t1 GVLTHFEHRAYKMATAFMLAHPYGFTRVMSSYDWPRNIVNGEDKNNWYGPPHNGDMSIKGRSIKADLSCGNGWTCEHRWR QIYNMVAFRNLVFGTTVNNWWDNGNKAIAFSRGNRGFIVINDDTVDVNANLQTGLPQGTYCDVISGNYENGACTGNEVHV GGDGRAHFHISHQSEDPVVAIHIGAKKGSPKKVIL |
|