Gene
| Gene Model ID | pfu_aug1.0_23314.1_18929 |
|---|---|
| Locus | scaffold23314.1 : 15186 ... 21780 : + |
| To GenomeBrowser | scaffold23314.1:15186..21780 |
| Genes list of scaffold | scaffold23314.1 |
| Synonym | pfu_aug2.0_278.1_27148 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23314.1_18929.t1 | 1 | 1 | TMEM138 | 58 | 115 | 1.5e-20 | 73.7 | 1.3e-24 | 1.9e-20 | 73.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23314.1_18929.t1 | gi|260837171|ref|XP_002613579.1| | hypothetical protein BRAFLDRAFT_277366 [Branchiostoma floridae] | 2.0e-19 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_23314.1_18929.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23314.1_18929.t1 atgaaccaaacaaattatcacttcgccgcttcacggctcggtgataatttgattggttcatgcgactcgggggaattact ggacaacaaatcacaactagctagttgttatttcttaaatagaattaaaagacatcacaatatacttcagatgttctatt taaaatgggaaacattacgatgggatgagccagatcgttatatttgggatacaactggattcatcccgctgtatgtgatt caacgtacaggtgctgttttgtattactacttttataagaggactgctctgaaactaggagatcctagattttaccagga ttcagactggataaggagagagtttgagaaaagaagataa |
|
Protein
| Protein ID | pfu_aug1.0_23314.1_18929.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23314.1_18929.t1 MNQTNYHFAASRLGDNLIGSCDSGELLDNKSQLASCYFLNRIKRHHNILQMFYLKWETLRWDEPDRYIWDTTGFIPLYVI QRTGAVLYYYFYKRTALKLGDPRFYQDSDWIRREFEKRR |
|