Gene
| Gene Model ID | pfu_aug1.0_23332.1_40414 |
|---|---|
| Locus | scaffold23332.1 : 54 ... 17525 : - |
| To GenomeBrowser | scaffold23332.1:54..17525 |
| Genes list of scaffold | scaffold23332.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Paraxis |
| Description | Best hit to AAH67836 TCF15 protein, partial [Homo sapiens] with 2e-34 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-orphan-HLH-f |
| Description | scaffold 37476.1; 13170...13346 (+) was used for analyses. Best hit to Q12870 Transcription factor 15 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23332.1_40414.t1 | 2 | 1 | HLH | 73 | 124 | 2.3e-18 | 65.6 | 2.5e-22 | 3.6e-18 | 64.9 |
| pfu_aug1.0_23332.1_40414.t1 | 2 | 2 | HLH | 154 | 171 | 2.3e-18 | 65.6 | 0.48 | 7200.0 | -3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23332.1_40414.t1 | gi|301616943|ref|XP_002937913.1| | 5.0e-33 |
Transcript
| Transcript ID | pfu_aug1.0_23332.1_40414.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23332.1_40414.t1 atgaaaagaaattccgatagagttcaaaaatcttcaagcaaaccggaagacgacattcataatttctccgacggaagtga cagtttcggatcctcggaagactgtgtaagtggaggaaccgcgtctggacggaaaagaaaatcccgtccgaattcttctg acaacgaggatcacccatcaggggattgtagttttgacggaacaaaagtaccgaaacaaagggtggcggctaacgccagg gaacgagacaggactcatagtgttaacacagcatttgtaactctcaggaccttgatcccgacagaacctgctgaccggaa gttgtctaaaatcgagactttaagactggccacgagttacattgcgcatttgaacactgtgttaatggtgggcgcggact gcattgatcagccgtgtataaaacatcaagccatgttaagggggagcttggacaacttaccaaaacctgtttgtactttt tgcctcagtgcatccagaaccagaccgtccaaacttatagaggtgtaccgggtgcccaaacggaagcaaaaaaaaaaata a |
|
Protein
| Protein ID | pfu_aug1.0_23332.1_40414.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23332.1_40414.t1 MKRNSDRVQKSSSKPEDDIHNFSDGSDSFGSSEDCVSGGTASGRKRKSRPNSSDNEDHPSGDCSFDGTKVPKQRVAANAR ERDRTHSVNTAFVTLRTLIPTEPADRKLSKIETLRLATSYIAHLNTVLMVGADCIDQPCIKHQAMLRGSLDNLPKPVCTF CLSASRTRPSKLIEVYRVPKRKQKKK |
|