Gene
| Gene Model ID | pfu_aug1.0_23339.1_47571 |
|---|---|
| Locus | scaffold23339.1 : 19 ... 15251 : + |
| To GenomeBrowser | scaffold23339.1:19..15251 |
| Genes list of scaffold | scaffold23339.1 |
| Synonym | pfu_aug2.0_13831.1_06526 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23339.1_47571.t1 | 4 | 1 | Rad4 | 48 | 93 | 2.4e-21 | 75.6 | 0.36 | 2700.0 | -2.4 |
| pfu_aug1.0_23339.1_47571.t1 | 4 | 2 | Rad4 | 325 | 325 | 2.4e-21 | 75.6 | 0.31 | 2300.0 | -2.2 |
| pfu_aug1.0_23339.1_47571.t1 | 4 | 3 | Rad4 | 366 | 482 | 2.4e-21 | 75.6 | 3.2e-25 | 2.4e-21 | 75.6 |
| pfu_aug1.0_23339.1_47571.t1 | 4 | 4 | Rad4 | 599 | 613 | 2.4e-21 | 75.6 | 0.57 | 4200.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23339.1_47571.t1 | gi|224066177|ref|XP_002194725.1| | PREDICTED: DNA repair protein complementing XP-C cells [Taeniopygia guttata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_23339.1_47571.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23339.1_47571.t1 atgtctcttctgctacagatggaaggaggcagtatgtatcagaccggaaatgatgttaggccaggtgggtctgggatgga gactgctgctttccatgatgatgatagtgatgaattaggcagtgatgaagacgagtcagattgggaagaagttgaagatg atccacgccacaagagtcccaaaaagtctcagattccaacagagcctgtccaggtcacaatagatgctccagatttcata aagaaaaggaaaaagaaggaatttgatatgaatgcatatatcaaacgtcagatgaacaggtttcaaagggagcttagaga agatatccacaaggttcacttaatgctgctgttggcaaggggaatgtacttgaacaggatctgtaatgacgtgaccctac aagctgttaccctgtccatcattcctaaggaatacatacatacgtcaccatccaggtacaactttagctccgtggagagg ctgatgacttggtactcggctatagtcagcatggactcgtcactggaagtacaggatgatttgagatcaacccttgtgaa aagactggaggacagaaaagttgcctctaccttggaatatgtactgggtggaaaggcatcaacacaaaagaaggctatca aagacaagcaatcagctagtcaaaaaaatcaaaataaggttgagaaaggtagaaacaatgaatcaaaacctcaatgtgga aaaagcacaaagacattatcaaaagaggagaaaaaaggcaaagaaagttcaaagttgcctgcaaaagtcaaggacaatag aaacaaatctttagtgaggaattcttccaaagggaaagctcttagaaagagagggagtattgtgaattataaagtagaga gtggtagtgacaatgaggagtctgaggaggaatatactccagaggaggaggacagtgaggaagggaagaaggacaggagg agcagaaataaatcaggcaaaggaaagagtagctccaagaaagcaaagagttgtaggaatgatgaatccgaagatgactt tgaagagaatgtaaaagaatatagaacgccaatcaataaatcagtattgatgaagaaatccagtactaataagaaaatat tgtcatctgactctgaagtcgacaccagtgaacaaggtgtggatcactgggtggaagtgtatctggagaataaatggata tgtgttaactgccttcacaagcagcttaacagaccatacaggctggagagtggttctacacaaccagtacattatgttgt cacttactttcaagatggaagtttaaaggacgtcacggcacgttatgcctctaattggatgacagacactcgaaaactac gcacagaccctggatggtgggaggataccattaacccttacagaccactaaatgtcaagtttgatgaaaaagaggacagt gaaatcaaagtatccctgatgagaagaccaatgccaacttctatagcagcttttaagagtcacccactacttgatggttt tgttgtatgtgaggaacataaggagaccttgatggctgcttgggaagaggaccaagaaatacagaaacagagggaggcag agaaaagggagaagagagtgttgaacaattggaaagtattaattaaaggccttttgatcaaagacagactcaagaaaaga tttgacttacaggagcagaaaaataaaggagatctatgtgaggaggagaccaagaaatttgccggcagtgagaaggctac agatgctgagctttcatggccacgaaaacaacaagaacaaagagctaaaaacacaaaggggaaaagctctacctctactt caaatcataactctacctcagctcattatgaagtagaaaccttgtag |
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Protein
| Protein ID | pfu_aug1.0_23339.1_47571.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23339.1_47571.t1 MSLLLQMEGGSMYQTGNDVRPGGSGMETAAFHDDDSDELGSDEDESDWEEVEDDPRHKSPKKSQIPTEPVQVTIDAPDFI KKRKKKEFDMNAYIKRQMNRFQRELREDIHKVHLMLLLARGMYLNRICNDVTLQAVTLSIIPKEYIHTSPSRYNFSSVER LMTWYSAIVSMDSSLEVQDDLRSTLVKRLEDRKVASTLEYVLGGKASTQKKAIKDKQSASQKNQNKVEKGRNNESKPQCG KSTKTLSKEEKKGKESSKLPAKVKDNRNKSLVRNSSKGKALRKRGSIVNYKVESGSDNEESEEEYTPEEEDSEEGKKDRR SRNKSGKGKSSSKKAKSCRNDESEDDFEENVKEYRTPINKSVLMKKSSTNKKILSSDSEVDTSEQGVDHWVEVYLENKWI CVNCLHKQLNRPYRLESGSTQPVHYVVTYFQDGSLKDVTARYASNWMTDTRKLRTDPGWWEDTINPYRPLNVKFDEKEDS EIKVSLMRRPMPTSIAAFKSHPLLDGFVVCEEHKETLMAAWEEDQEIQKQREAEKREKRVLNNWKVLIKGLLIKDRLKKR FDLQEQKNKGDLCEEETKKFAGSEKATDAELSWPRKQQEQRAKNTKGKSSTSTSNHNSTSAHYEVETL |
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