Gene
| Gene Model ID | pfu_aug1.0_234.1_29151 |
|---|---|
| Locus | scaffold234.1 : 72886 ... 81027 : + |
| To GenomeBrowser | scaffold234.1:72886..81027 |
| Genes list of scaffold | scaffold234.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | PFMG9 like |
| Description | reciprocal BLASTN best hit to DQ116436.1 Pinctada fucata mantle protein 9 (MG9) mRNA mRNA |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_234.1_29151.t1 | 2 | 1 | Kazal_1 | 3 | 28 | 7.2e-07 | 29.1 | 0.0028 | 21.0 | 5.2 |
| pfu_aug1.0_234.1_29151.t1 | 2 | 1 | Kazal_2 | 3 | 28 | 1.3e-06 | 28.2 | 0.00083 | 6.2 | 6.8 |
| pfu_aug1.0_234.1_29151.t1 | 2 | 2 | Kazal_1 | 33 | 67 | 7.2e-07 | 29.1 | 1.6e-10 | 1.2e-06 | 28.4 |
| pfu_aug1.0_234.1_29151.t1 | 2 | 2 | Kazal_2 | 33 | 67 | 1.3e-06 | 28.2 | 2.9e-09 | 2.2e-05 | 24.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_234.1_29151.t1 | gi|71063300|gb|AAZ22318.1| | mantle protein 9 [Pinctada fucata] | 1.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantleEdge | 2 |
| mantlePallium | 2 |
Transcript
| Transcript ID | pfu_aug1.0_234.1_29151.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_234.1_29151.t1 atgtgcaaccggtgccgacttaggacggccatctgccacggaaatagcagaagtggagtcgaaatagcatatcctggaag atgtgaggattgcatctgtccacgaaatattgccccagtttgcggaataaatggacggacgtatttgaatgattgtatta ggagatgcagtggaataccaaaggcttatgatggtccgtgtataggaggcgggagagataagcttctcagtcagggatat gttcgtaaccgactaacatcgtcattgaggaagttctacggtcgatatggggaactcgtcatacactacgatgtcctact ctccagaatggtggatgatattctgttatag |
|
Protein
| Protein ID | pfu_aug1.0_234.1_29151.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_234.1_29151.t1 MCNRCRLRTAICHGNSRSGVEIAYPGRCEDCICPRNIAPVCGINGRTYLNDCIRRCSGIPKAYDGPCIGGGRDKLLSQGY VRNRLTSSLRKFYGRYGELVIHYDVLLSRMVDDILL |
|