Gene
| Gene Model ID | pfu_aug1.0_2344.1_15792 |
|---|---|
| Locus | scaffold2344.1 : 1178 ... 15145 : - |
| To GenomeBrowser | scaffold2344.1:1178..15145 |
| Genes list of scaffold | scaffold2344.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-orphan-HLH-c |
| Description | Best hit to ADM47440 methoprene tolerant protein [Rhodnius prolixus] with 1e-07 by a BLASTP search against NCBI nr database. The predicted protein has no other domains than HLH. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2344.1_15792.t1 | 2 | 1 | HLH | 29 | 75 | 2.5e-09 | 36.6 | 1.7e-13 | 2.5e-09 | 36.6 |
| pfu_aug1.0_2344.1_15792.t1 | 2 | 2 | HLH | 119 | 125 | 2.5e-09 | 36.6 | 0.46 | 6900.0 | -3.2 |
Transcript
| Transcript ID | pfu_aug1.0_2344.1_15792.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2344.1_15792.t1 atgctgtctacctttcatcattctaattttgtttatcatatcaccataaagacggggcaaggccgtaatgcaaagaaatt gcgcagggagggggaaaagttgcgcagagaaaagttgaaccagaggataaaggaactggcagaggctgtgccatggttac ctaaatctgaacaaaggccggaaaagacgcgcattctgaaactggcagcgtcatatcttagatttcatcatggtaaaagc attttagtgaccatttccatagattttgatgacgtcataattactctacgtcagataccgtcccaaatgggagtacttca ctcggaccataacgaaaggaaatctttctgcgtcaggatggagagcattaatgaacatggagacagcaaacagtacgaga ctattcagattagtgggcgggtcagcttcattgactcagccaatcagaatccttctaaagctgccagtaagaatttaaga aatggattttaa |
|
Protein
| Protein ID | pfu_aug1.0_2344.1_15792.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2344.1_15792.t1 MLSTFHHSNFVYHITIKTGQGRNAKKLRREGEKLRREKLNQRIKELAEAVPWLPKSEQRPEKTRILKLAASYLRFHHGKS ILVTISIDFDDVIITLRQIPSQMGVLHSDHNERKSFCVRMESINEHGDSKQYETIQISGRVSFIDSANQNPSKAASKNLR NGF |
|