Gene
| Gene Model ID | pfu_aug1.0_2344.1_15793 |
|---|---|
| Locus | scaffold2344.1 : 15586 ... 25685 : + |
| To GenomeBrowser | scaffold2344.1:15586..25685 |
| Genes list of scaffold | scaffold2344.1 |
| Synonym | pfu_aug2.0_13172.1_09846 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2344.1_15793.t1 | 2 | 1 | MFS_1 | 28 | 91 | 3.3e-07 | 29.3 | 1.7e-06 | 0.0051 | 15.5 |
| pfu_aug1.0_2344.1_15793.t1 | 2 | 2 | MFS_1 | 151 | 240 | 3.3e-07 | 29.3 | 8.8e-08 | 0.00026 | 19.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2344.1_15793.t1 | gi|329663323|ref|NP_001192752.1| | major facilitator superfamily domain-containing protein 8 [Bos taurus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2344.1_15793.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2344.1_15793.t1 atgcattgttacgtcacgagcgttttcatccgaagtggtcctagtatccctgactataagccagactacatcgctgtgat atctaccatcgtcattttcttcgtcgtcctgttcgtttttgccgtctttgaaacgattggcacacccctcactatggaca tgtatgcatggacccgatctcaagccactctgtataatggtattattctggctacagggggcatcatagctatcgttagc tttgtcataatcaaaatcatatccaaaaagcgacaccagcatttgattgctatgtttgacgaacacgaccatgcagccaa aatccacaacaccacaatgctccccttttctcaacctgctcttcccgatttccacaacgaaacgaccacacccaaaagta acggcacgggcaaggaggacgaacccacgggttgtccggattcctacgcttggtgtgcattcactcctgtagtgagactg tggcagttccttctgggaactttgctgatttgtgttggataccctacgtgcaatgtcatgtcctacacgctgtactcaaa gatactgggtcctaaaccacagggtacctggatggggtggttaacagcatcaggtagcctggcaagaactgtaggtccta tatttgtaagtcaggtgtataattcgtacggaccacgtgtgactttcatctctatgagcggcgtcgttcttttcactatt ggtggcttctgtggcatttataggaaacttgtgccgttcaaattcatagacgacggagaatga |
|
Protein
| Protein ID | pfu_aug1.0_2344.1_15793.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2344.1_15793.t1 MHCYVTSVFIRSGPSIPDYKPDYIAVISTIVIFFVVLFVFAVFETIGTPLTMDMYAWTRSQATLYNGIILATGGIIAIVS FVIIKIISKKRHQHLIAMFDEHDHAAKIHNTTMLPFSQPALPDFHNETTTPKSNGTGKEDEPTGCPDSYAWCAFTPVVRL WQFLLGTLLICVGYPTCNVMSYTLYSKILGPKPQGTWMGWLTASGSLARTVGPIFVSQVYNSYGPRVTFISMSGVVLFTI GGFCGIYRKLVPFKFIDDGE |
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