Gene
| Gene Model ID | pfu_aug1.0_23501.1_62227 |
|---|---|
| Locus | scaffold23501.1 : 1 ... 9165 : - |
| To GenomeBrowser | scaffold23501.1:1..9165 |
| Genes list of scaffold | scaffold23501.1 |
| Synonym | pfu_aug2.0_213.1_10445 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23501.1_62227.t1 | 1 | 1 | CC2D2AN-C2 | 395 | 563 | 2.5e-35 | 121.4 | 5.5e-39 | 4.1e-35 | 120.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23501.1_62227.t1 | gi|260829325|ref|XP_002609612.1| | hypothetical protein BRAFLDRAFT_87833 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_23501.1_62227.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23501.1_62227.t1 atgtatgcatggaggagaccagaatatgatgactctaaggaaacgttagacaaacaaatggctgttctatactatccaga aatatctacagttcccccagaagagaaggtgtttggtgaggagaaagagcccaggtttttagaggatgaaggactgtacg ttggtattagacctaaaatgtcaggctggaatctcaataaaatggagcatcgactactgaaggagagggaatctaaactt agaaagggaggaggtaactggtttggtgaggatggtagaatgttggccctacccgaccccctacgtcccagcccgtcccg ccctcctatccctgaggagcaggaggaaggcctagaggtgcagttccagaaggcgattgtacgagagtttgatagtcgat atattgacggcactcctaatgcctcaggattttaccagttagacattgatattaattccttggtattttcacatcatcat ctgtttagcagagagcacgtgctggccaacaaactgaatgaactgtatgatgaatacgtcctgaggaggtccctaaacat ggctgactatctcacagaaaagtctgagcatgattatgctgacagagcaaattttgaaaggagactgcttgattataaat atcagatcaagacaggaagagaaatgcgtgaccgagaacaaagacgggatcgtgaacttctcaaacaaataattaacata tggaaagaactgaaagctgaaagaacaaaacaaaaccatatcaactgtccagagaaactaactatcacaagggaggaggt agataaggagaaagaccagatgatatggaagatggagatagaagatgagcttgaggagataagggaggagcgtcaagagg agtatgagaggaaaatggcagaatataacgaggagctgaaggcatatcaggctcaacaaaaggctaagaaagaggcagaa actagaaagaagaaaagggagaagaacaccaaaggttccaaagcctccctgggatctagagcttcaaagcagagcaagga taatgatccatctcccgaggagatagctaaagatgaggagatcattaatgagccagattatccccagccagacaagccgg agcctccagatgacactgtgagccgagatcagattgtggccaaggccaaggagatacgcaggaggccaggagagcctaaa ctttacctagaactgacaaatactcaaactatcactccaacacaggattgtcctagaggagaacaaagcagaagagatga tgtttctaaatgtaaagtttttgtgaaaatcttgttcaacaacaaagaggtttccaggagtgattccagaccattgtccc aagaattcaaagtaaattttggacagatttttaatctgaaaatagtacagtggccagaaaatattatacttcagctttat gagcagcgagggttttctacagaaatgctagcagaactgaacgctaagattccagatgcttctgtatcgtctaaatctgt ccatctggaggatatgtcagtggagtgtaaccttaaagtcagccatagtcataatggtgtgggcagtggtgtgtcatttc cattcaccatcaaaggcttggaggacactacactgataacaagagggaagctgaactgttctgtcggctgggctgtagat gagaacggggagttactggtccctccctctacacagataactgagggtgttgttagatattataacaatttaatggtgta g |
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Protein
| Protein ID | pfu_aug1.0_23501.1_62227.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23501.1_62227.t1 MYAWRRPEYDDSKETLDKQMAVLYYPEISTVPPEEKVFGEEKEPRFLEDEGLYVGIRPKMSGWNLNKMEHRLLKERESKL RKGGGNWFGEDGRMLALPDPLRPSPSRPPIPEEQEEGLEVQFQKAIVREFDSRYIDGTPNASGFYQLDIDINSLVFSHHH LFSREHVLANKLNELYDEYVLRRSLNMADYLTEKSEHDYADRANFERRLLDYKYQIKTGREMRDREQRRDRELLKQIINI WKELKAERTKQNHINCPEKLTITREEVDKEKDQMIWKMEIEDELEEIREERQEEYERKMAEYNEELKAYQAQQKAKKEAE TRKKKREKNTKGSKASLGSRASKQSKDNDPSPEEIAKDEEIINEPDYPQPDKPEPPDDTVSRDQIVAKAKEIRRRPGEPK LYLELTNTQTITPTQDCPRGEQSRRDDVSKCKVFVKILFNNKEVSRSDSRPLSQEFKVNFGQIFNLKIVQWPENIILQLY EQRGFSTEMLAELNAKIPDASVSSKSVHLEDMSVECNLKVSHSHNGVGSGVSFPFTIKGLEDTTLITRGKLNCSVGWAVD ENGELLVPPSTQITEGVVRYYNNLMV |
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