Gene
| Gene Model ID | pfu_aug1.0_23556.1_33356 |
|---|---|
| Locus | scaffold23556.1 : 3546 ... 6745 : - |
| To GenomeBrowser | scaffold23556.1:3546..6745 |
| Genes list of scaffold | scaffold23556.1 |
| Synonym | pfu_aug2.0_91.1_03601 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23556.1_33356.t1 | 3 | 1 | Neur_chan_memb | 4 | 18 | 5.7e-12 | 46.0 | 0.52 | 3800.0 | -2.6 |
| pfu_aug1.0_23556.1_33356.t1 | 1 | 1 | Neur_chan_LBD | 29 | 227 | 1.3e-38 | 132.3 | 2.40042e-42 | 1.8e-38 | 131.8 |
| pfu_aug1.0_23556.1_33356.t1 | 3 | 2 | Neur_chan_memb | 237 | 318 | 5.7e-12 | 46.0 | 7.7e-16 | 5.7e-12 | 46.0 |
| pfu_aug1.0_23556.1_33356.t1 | 3 | 3 | Neur_chan_memb | 364 | 391 | 5.7e-12 | 46.0 | 0.094 | 700.0 | -0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23556.1_33356.t1 | gi|109086283|ref|XP_001099152.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 isoform 1 [Macaca mulatta] | 2.00386e-43 |
Transcript
| Transcript ID | pfu_aug1.0_23556.1_33356.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23556.1_33356.t1 atgtatctattcattctcctgtgtgtttttgtgatcatcaatttcgtattgtcgtcaacaaagagtgactatgcagaagt gtttgaggaaatcttccaaacaaacaagtataacaagaaagtactaccacaggaagattcagacgagcctctagaggtcc atatcagcttccagctttttggaatcgaaattgacgaagttgtggagaaaatgtttacaaccggttatcttgcagtatca tggcatgacttgggactagcctgggatccttcaaatcacaatcaagtggaaaatgtatacgtccctcaagatgacgtatg gaaaccagatatatttctgcaaaacggtttcaagaaattggtagatctcggaacgccatcttattacatttccgtggatc ataacggctggacaacatgggttccttttgaggtatttgaaacaagttgctctttagatacaactttctttccatttgac gagcagaactgcaatgtatctatcgtgatatggagccatacgttgaatgaaattatctttgtggaagctgaggatgcgat tattttcaacgtactttttcaggaaaacagcgtctgggacatcatttctcttacctcttatgtaagtgatgattcaacag aacctaaaataacttacactataaaactaaaacggaaacctctgtactatgtgttcaacatactgctaccagtagagttt ctaggatttctgaatgggcttgtgtttgtgattccagcggatactggtgagaagatggggttttcaatgacggtatttct atctctggcagttttcttgaccagtataagtgaggcactaccagtaaattctgtaaacgtatcagttcttggcgtatatc tcctcttacaagtcattataggagtatgcgtacttattacgtcagctttacaattacgcctgaatgctcgtaatacgtca cttgtggtctctggggcgtacctcagaatcgttcaaatgagaacaaaatgctgcgggaggcaggtcagaatgaaagcttg tccagatgatgtatctatcacaaacatggaaacaacactgacagatttttcctgggatcaggttgtttcagccatcgact tatttggattttcgtttattattattgtttacactataatgtcattggtgatgctagcaattcttatcattcagtggtct acgtaa |
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Protein
| Protein ID | pfu_aug1.0_23556.1_33356.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23556.1_33356.t1 MYLFILLCVFVIINFVLSSTKSDYAEVFEEIFQTNKYNKKVLPQEDSDEPLEVHISFQLFGIEIDEVVEKMFTTGYLAVS WHDLGLAWDPSNHNQVENVYVPQDDVWKPDIFLQNGFKKLVDLGTPSYYISVDHNGWTTWVPFEVFETSCSLDTTFFPFD EQNCNVSIVIWSHTLNEIIFVEAEDAIIFNVLFQENSVWDIISLTSYVSDDSTEPKITYTIKLKRKPLYYVFNILLPVEF LGFLNGLVFVIPADTGEKMGFSMTVFLSLAVFLTSISEALPVNSVNVSVLGVYLLLQVIIGVCVLITSALQLRLNARNTS LVVSGAYLRIVQMRTKCCGRQVRMKACPDDVSITNMETTLTDFSWDQVVSAIDLFGFSFIIIVYTIMSLVMLAILIIQWS T |
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