Gene
| Gene Model ID | pfu_aug1.0_23580.1_26106 |
|---|---|
| Locus | scaffold23580.1 : 5016 ... 9093 : + |
| To GenomeBrowser | scaffold23580.1:5016..9093 |
| Genes list of scaffold | scaffold23580.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | 60A(gbb)-like |
| Description | NCBI BLASTP hit to ref|XP_002407531.1| |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23580.1_26106.t1 | 1 | 1 | TGFb_propeptide | 25 | 172 | 5.3e-26 | 91.3 | 4.0e-30 | 6.0e-26 | 91.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23580.1_26106.t1 | gi|241623169|ref|XP_002407531.1| | transforming growth factor beta, putative [Ixodes scapularis] | 2.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_23580.1_26106.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23580.1_26106.t1 atggatttttgtagtttatcgttgatttttgtcgtttttgtaaaatttatcaattgcactacgtctggatattatgccga caatggtgtggatcaaacagagcaaatacacgtgatgaatagtagagacaaacgagagctccaacacgagatattgactc ttctgggcctccatcagagaccgaaaccaaaaactctcagcaccaaaaactcggcacctaaattcatggtggacctgtat aagagtataacgtcagataatgggctggtgatagaaaacgacgagaaaacgttccatactcatcataacattacacttgg tgacagttttctccaaccagttgacggaactgacgtcattatgagctttgtcaacagagcaaacagagtagcgcatttga ggcacgagagagacagaacattttatttcgacttcagtaaagttacatctaaagaatcagtgttggggagtgaattaagg ctgtataaagaggctgccaagaaatggaaaaacaacttattcacgg |
|
Protein
| Protein ID | pfu_aug1.0_23580.1_26106.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23580.1_26106.t1 MDFCSLSLIFVVFVKFINCTTSGYYADNGVDQTEQIHVMNSRDKRELQHEILTLLGLHQRPKPKTLSTKNSAPKFMVDLY KSITSDNGLVIENDEKTFHTHHNITLGDSFLQPVDGTDVIMSFVNRANRVAHLRHERDRTFYFDFSKVTSKESVLGSELR LYKEAAKKWKNNLFT |
|