Gene
| Gene Model ID | pfu_aug1.0_23612.1_69572 |
|---|---|
| Locus | scaffold23612.1 : 1 ... 9968 : + |
| To GenomeBrowser | scaffold23612.1:1..9968 |
| Genes list of scaffold | scaffold23612.1 |
| Synonym | pfu_aug2.0_1634.1_15160 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23612.1_69572.t1 | 1 | 1 | Cauli_VI | 63 | 105 | 1.8e-14 | 53.4 | 2.0e-17 | 4.3e-14 | 52.2 |
| pfu_aug1.0_23612.1_69572.t1 | 1 | 1 | RNase_H | 170 | 312 | 8.0e-21 | 74.7 | 2.0e-23 | 4.2e-20 | 72.4 |
| pfu_aug1.0_23612.1_69572.t1 | 1 | 1 | PHD | 333 | 382 | 5.3e-07 | 29.2 | 6.3e-10 | 1.3e-06 | 27.9 |
| pfu_aug1.0_23612.1_69572.t1 | 1 | 1 | DUF1768 | 606 | 719 | 1.0e-25 | 90.3 | 4.8e-29 | 1.0e-25 | 90.3 |
| pfu_aug1.0_23612.1_69572.t1 | 1 | 1 | RVT_1 | 718 | 788 | 7.2e-06 | 25.5 | 1.1e-08 | 2.3e-05 | 23.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23612.1_69572.t1 | gi|348518291|ref|XP_003446665.1| | 1.0e-38 |
Transcript
| Transcript ID | pfu_aug1.0_23612.1_69572.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23612.1_69572.t1 gtttcacatacaccagtttaatgtagacgagttgatgatgtgttgccttccataccatgagagtaagattttctcccgcg tggtccaactgctgacactggattccaaaacagccactaagtgggactggctgctaccagtacagatgatcaaaatgacc aaggataagaaaaatacggataaaaactactatgcagtgacaaaaggtagaaactgtggaatatttaaacaatggagtca agtgaaacctttagtggacaaatatccaggagccgcgttcaaaggtttcaacgaattacaggaagccattaatttcatgg taatgggtggaattgaaatccacaatgtaatgttgtatgaagatacaacaactacaacaaatgctgataatgtcatggtt tttgcggaaagaagcggaatttcgctgtcagtagaaacaaatcctgacaaagataccgatgaaatagcgtccgatagtga gacagaggagaaattcttggatgcctcagaagaacttgttgtttatattgatggttgttgtttgaataatgggaacacaa atagtgtaagcaaagctggtattggtgtgtactggggaccggatcacagacttaacgttagtgagccgatatcaaatgga aagaagacaaacaacacagctgaacttctgtctgcaatcaaagcgttggaacaaatcgaagaaaataaacttgccaatgt gatagttaagtctgatagtaaatacgtgactgatggaattacaaaatggatcctaaagtggaaatctaacaactggtcaa caacaagtggatcagaagtggaaaacaaggatctgtggatgaaattggacgtacttaatgcagcggtcaatccaagatgg gaacacattggccgcgaatttaacgctcaagctgacaaactgtccaaagatggagccaacattgaaactgcaatgaatgt actgcaagctggaacagagaagaatattgtatcgtcgtgcgttatttgcaacacagaatcaacgagggacgtactagtat gttcgtcttgtaataggaaagtgcactacaagtgtagcggtttgccaaattatcaagtggcagtatttagaaaatcgcaa agaaagtttacatgtgaaaaatgtgttgtggatgcagggaatgttacagcaggtgatgcgcgaagatcttgtggtgtagt tcgcgatgaccccgcgttggaaccgacatctttacagtgtacgaatgtgcattctcagccagaaatatccgaggaaatta gtggcatgaagaaagaaatccaaagtgttaaatcctccttctcgtgtctagagtcagaattattaaaaatcgtttcacaa ttatgtagcgaaaatgtacaaatgaaggaaagagtgtgcgaggagaaattaaaagctgtggaaaaagaaaacatggaatt aattgggaaagtgcagaagaatgaaaacagggagcaagatttgagaggtcaaatggaaaatcttcttgacaagaatgcaa agctgagtgccgagtgcgaaaatttgcgtaaaaacatcgcaatgcgaaaagaatctgagaccgacatgaaggttttgctg aagcagaaagacgaaatgattgaagaattgcgtaataatcagaaatcgcatcatcaaatccacgaaacggtaggaaatca aggtgaagaattagaggatcagttgcgcgctaacgtaaccgttacaaacaggtttgaacctttgtcatttcaaccgaaac atgcacatgctacttttgagaagaggcctgatgctgtttatgttaaaggatatagggaacctctgtcaaatttttaccgt atggaatttcaatggcagcagaacacctttaatagcttggagcaagcatttcaacacgagaaagctcgtcgacatggtga ccacagaacagcgaagcgaattttggccgcgaaacacgcaggaatcgcaaacaagataggtcgagatgtacggattcatc ctatgtgggaccgagaaaaggaaaagatcatgtaccagatgttatgggaaaaatcaaatcaaagcgaggaattccgtcat gaactcctgagaactgccgacaaagagatctatgaggagcttcccgacaaattttggggcacagggcgtgatgatgattt agtgttaatttcaacaacgaaagagggactgcaacgaaaatttgataaactgaatcagtactgcgataaatggcgactga gtgtgaatgtagagaaaacaatgatcatgcctctctctaaaagtggacggattccaaaaaacaacgcaaatataaaattc aacggcaaagatctcgctttctcaaatacatataaataccttggtgtcctatttgactcagcagttctgtccgaggttca aatgagtggcagtattgcagacaaaaccataagaaatatcttggtcagttatgtaagatatggaagtactacacagaatg cagagcacttggctcagatgggagaacagatgaaaagtattgtccgccttctggaggcaaggtattcagactctgtagac aaggcagttaagtctgtactcgctgacccacagtttacggagatgaaatctctgatacaggactttctgaacctctctgt cctctctatacaacactacaatatgccagatagtaacgcaagcctggtcctgtcactcaatcatagaacgtcacacgtca ggataaatgctgttaactacctactgcagaatgtcgataaggatgaagatggggaatttttgtctgatgctgtattagca cgtttaagtgatgattctacagaggtggtcgacgctgtccttacaaagacaggaaagacagaagatatggcttatatttg gcaaagagttgctgccttgacgactagtgttaaacatcggaagacttttaagaatcgattatcggaaaataatcggaaag tgtaa |
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Protein
| Protein ID | pfu_aug1.0_23612.1_69572.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23612.1_69572.t1 FHIHQFNVDELMMCCLPYHESKIFSRVVQLLTLDSKTATKWDWLLPVQMIKMTKDKKNTDKNYYAVTKGRNCGIFKQWSQ VKPLVDKYPGAAFKGFNELQEAINFMVMGGIEIHNVMLYEDTTTTTNADNVMVFAERSGISLSVETNPDKDTDEIASDSE TEEKFLDASEELVVYIDGCCLNNGNTNSVSKAGIGVYWGPDHRLNVSEPISNGKKTNNTAELLSAIKALEQIEENKLANV IVKSDSKYVTDGITKWILKWKSNNWSTTSGSEVENKDLWMKLDVLNAAVNPRWEHIGREFNAQADKLSKDGANIETAMNV LQAGTEKNIVSSCVICNTESTRDVLVCSSCNRKVHYKCSGLPNYQVAVFRKSQRKFTCEKCVVDAGNVTAGDARRSCGVV RDDPALEPTSLQCTNVHSQPEISEEISGMKKEIQSVKSSFSCLESELLKIVSQLCSENVQMKERVCEEKLKAVEKENMEL IGKVQKNENREQDLRGQMENLLDKNAKLSAECENLRKNIAMRKESETDMKVLLKQKDEMIEELRNNQKSHHQIHETVGNQ GEELEDQLRANVTVTNRFEPLSFQPKHAHATFEKRPDAVYVKGYREPLSNFYRMEFQWQQNTFNSLEQAFQHEKARRHGD HRTAKRILAAKHAGIANKIGRDVRIHPMWDREKEKIMYQMLWEKSNQSEEFRHELLRTADKEIYEELPDKFWGTGRDDDL VLISTTKEGLQRKFDKLNQYCDKWRLSVNVEKTMIMPLSKSGRIPKNNANIKFNGKDLAFSNTYKYLGVLFDSAVLSEVQ MSGSIADKTIRNILVSYVRYGSTTQNAEHLAQMGEQMKSIVRLLEARYSDSVDKAVKSVLADPQFTEMKSLIQDFLNLSV LSIQHYNMPDSNASLVLSLNHRTSHVRINAVNYLLQNVDKDEDGEFLSDAVLARLSDDSTEVVDAVLTKTGKTEDMAYIW QRVAALTTSVKHRKTFKNRLSENNRKV |
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