Gene
| Gene Model ID | pfu_aug1.0_23670.1_40437 |
|---|---|
| Locus | scaffold23670.1 : 216 ... 5809 : + |
| To GenomeBrowser | scaffold23670.1:216..5809 |
| Genes list of scaffold | scaffold23670.1 |
| Synonym | pfu_aug2.0_44.1_13476 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23670.1_40437.t1 | 3 | 1 | WD40 | 53 | 80 | 1.1e-06 | 28.2 | 7.4e-05 | 0.55 | 10.2 |
| pfu_aug1.0_23670.1_40437.t1 | 3 | 2 | WD40 | 116 | 138 | 1.1e-06 | 28.2 | 0.00042 | 3.1 | 7.8 |
| pfu_aug1.0_23670.1_40437.t1 | 3 | 3 | WD40 | 186 | 205 | 1.1e-06 | 28.2 | 0.0017 | 13.0 | 5.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23670.1_40437.t1 | gi|260828127|ref|XP_002609015.1| | hypothetical protein BRAFLDRAFT_84831 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_23670.1_40437.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23670.1_40437.t1 atgcatcggatgcagcatctgacctactttttccacttgagtgattttgcttttaaagccaatattgagcaaacttttga gtgctatgccgtgttgatagtaacagtatttgaggagcccgaggaccctacaaatagaagttttttctccgaaattatat ccagtatatcagatgttaaatttagtcataatggacgttacatggtgacgcgtgactacctgtctgtcaaagtctgggat ttattgatggaaactaaaccaatcgaaacgtatcaagtgcatgaatatttgaggagtaaattgtgttctttatatgaaaa tgattgtatatttgacaagtttgaatgttcctggagtggggatgataggcagataatgactggctcatacaacaatttct tccgcatgttcgacagggaaacaaaacgtgatatcacattagaggcttgtagagacaatatgaaaccaaggacagtactc aaacccaggaaagtctgcaccggtggaaaacgcaagaaagaagaaattaccgtcgactgtttggactttaataagaagat actacacacagcttggcatcccaacgaaaatatactggctgtggcggccacaaataacttgtatatcttccaaagtaaag attaa |
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Protein
| Protein ID | pfu_aug1.0_23670.1_40437.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23670.1_40437.t1 MHRMQHLTYFFHLSDFAFKANIEQTFECYAVLIVTVFEEPEDPTNRSFFSEIISSISDVKFSHNGRYMVTRDYLSVKVWD LLMETKPIETYQVHEYLRSKLCSLYENDCIFDKFECSWSGDDRQIMTGSYNNFFRMFDRETKRDITLEACRDNMKPRTVL KPRKVCTGGKRKKEEITVDCLDFNKKILHTAWHPNENILAVAATNNLYIFQSKD |
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