Gene
| Gene Model ID | pfu_aug1.0_2379.1_22969 |
|---|---|
| Locus | scaffold2379.1 : 34436 ... 36856 : + |
| To GenomeBrowser | scaffold2379.1:34436..36856 |
| Genes list of scaffold | scaffold2379.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2379.1_22969.t1 | 2 | 1 | DUF1973 | 8 | 57 | 2.7e-09 | 36.7 | 3.7e-13 | 5.5e-09 | 35.7 |
| pfu_aug1.0_2379.1_22969.t1 | 2 | 2 | DUF1973 | 77 | 86 | 2.7e-09 | 36.7 | 0.17 | 2500.0 | -2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2379.1_22969.t1 | gi|183985704|gb|AAI66222.1| | LOC100158554 protein [Xenopus (Silurana) tropicalis] | 6.0e-12 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2379.1_22969.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2379.1_22969.t1 atggacattgctaacggttctacaattagattgtacacttccgtcatgcgcagaggagcacctattctcggagcaagtgt cagagcagtgttagatggatcagcaaacgacattccgttgcttgataaaggctacggtgctgacaccattgagaatgatg gcatctattctgcttacatcttacccaaacatctgagtggtaatggaagaacgagtgcaaaggtcaccgtggacaacaag gacggttctgctacggtcattgtaccactcagtcgtcgtaaacgtaatgcagaacccctccctggaaatgttgccgtgac aaccgctcaggcagatctgtttaagaggacagcattggcaggagagtttactacgataaactacgaggctgccactgcta cagatantcctagctccgtctcgcatctccacacttga |
|
Protein
| Protein ID | pfu_aug1.0_2379.1_22969.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2379.1_22969.t1 MDIANGSTIRLYTSVMRRGAPILGASVRAVLDGSANDIPLLDKGYGADTIENDGIYSAYILPKHLSGNGRTSAKVTVDNK DGSATVIVPLSRRKRNAEPLPGNVAVTTAQADLFKRTALAGEFTTINYEAATATDXPSSVSHLHT |
|