Gene
| Gene Model ID | pfu_aug1.0_23860.1_69593 |
|---|---|
| Locus | scaffold23860.1 : 20332 ... 29811 : - |
| To GenomeBrowser | scaffold23860.1:20332..29811 |
| Genes list of scaffold | scaffold23860.1 |
| Synonym | pfu_aug2.0_4618.1_29324 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23860.1_69593.t1 | 1 | 1 | zf-RING_2 | 10 | 53 | 5.3e-07 | 29.3 | 3.9e-10 | 5.3e-07 | 29.3 |
| pfu_aug1.0_23860.1_69593.t1 | 1 | 1 | zf-C3HC4_4 | 11 | 52 | 4.3e-12 | 45.7 | 1.4e-14 | 1.9e-11 | 43.6 |
| pfu_aug1.0_23860.1_69593.t1 | 1 | 1 | zf-C3HC4 | 11 | 52 | 7.0e-09 | 35.1 | 5.2e-12 | 7.0e-09 | 35.1 |
| pfu_aug1.0_23860.1_69593.t1 | 2 | 1 | zf-C3HC4_2 | 11 | 52 | 1.5e-07 | 31.2 | 1.1e-10 | 1.5e-07 | 31.2 |
| pfu_aug1.0_23860.1_69593.t1 | 1 | 1 | zf-RING_UBOX | 11 | 50 | 7.8e-07 | 28.7 | 1.3e-09 | 1.8e-06 | 27.5 |
| pfu_aug1.0_23860.1_69593.t1 | 2 | 2 | zf-C3HC4_2 | 90 | 105 | 1.5e-07 | 31.2 | 0.61 | 820.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23860.1_69593.t1 | gi|301614716|ref|XP_002936823.1| | PREDICTED: probable E3 ubiquitin-protein ligase MID2 [Xenopus (Silurana) tropicalis] | 1.0e-15 |
Transcript
| Transcript ID | pfu_aug1.0_23860.1_69593.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23860.1_69593.t1 atggcagcggcaattagtgcagaattgacatgtccaatttgcctagagatgttcgaagatcctgtgacactggcatgtat gcattcctactgcagacactgcctggagtccattctaaagtcaagttgcggcaagatacttcgttgtccggaatgtcgat tagagaccgcaataaccaatgttgacttgcagaaaatgccaaggaacttcactcttgccaacattgttgccaaatatgaa acagaggataaagttccaaaaataccctgtgacctttgtgacgaaaaaccaccaacacatgcagtaaagagctgcaaaga atgtgaagcatttcaattcagctcagtaaagaagtctcgacgcttccatcttcagtgggataataagcatgcagaattcg gtggaaataaggcaaacttgatgacagacggcgggcttcgaaaagtacgaggcggtgctatcggaactttgccattgcga gatcctttacaatactgggaagtgcaggtttctttccatttccgtggagtagaacaaggggaatatgtagttgccttagg aatttgtcccgttggaaaagtggatgcaatagatagccttccatgtaatttcttcttttatggaatagattttgcaaaaa gcgataaaggcaggttgattatatcaatgaaaagcgcaggtgtggaaaagaaaatagactatctgcaaccacaacggaac tacagtaaacgcattggatttctattcaatcctagacaactaaatctaacaataattgaattcgattccaatacggaaaa gattctatatacaacggatacactaaagacaggaggggatctcctacaacactgtataatggagtaccaccctgtttgtg atttaaatgatgtaggagatgccaaaattgaactattaactggttctgatatcatgaatattccaatgagcatcaaacag gctttggcaatgtga |
|
Protein
| Protein ID | pfu_aug1.0_23860.1_69593.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23860.1_69593.t1 MAAAISAELTCPICLEMFEDPVTLACMHSYCRHCLESILKSSCGKILRCPECRLETAITNVDLQKMPRNFTLANIVAKYE TEDKVPKIPCDLCDEKPPTHAVKSCKECEAFQFSSVKKSRRFHLQWDNKHAEFGGNKANLMTDGGLRKVRGGAIGTLPLR DPLQYWEVQVSFHFRGVEQGEYVVALGICPVGKVDAIDSLPCNFFFYGIDFAKSDKGRLIISMKSAGVEKKIDYLQPQRN YSKRIGFLFNPRQLNLTIIEFDSNTEKILYTTDTLKTGGDLLQHCIMEYHPVCDLNDVGDAKIELLTGSDIMNIPMSIKQ ALAM |
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