Gene
| Gene Model ID | pfu_aug1.0_239.1_22099 |
|---|---|
| Locus | scaffold239.1 : 11216 ... 20645 : - |
| To GenomeBrowser | scaffold239.1:11216..20645 |
| Genes list of scaffold | scaffold239.1 |
| Synonym | pfu_aug2.0_254.1_13885 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_239.1_22099.t1 | 2 | 1 | JmjC | 281 | 320 | 1.4e-12 | 47.8 | 0.67 | 1700.0 | -0.8 |
| pfu_aug1.0_239.1_22099.t1 | 2 | 2 | JmjC | 746 | 837 | 1.4e-12 | 47.8 | 6.7e-15 | 1.7e-11 | 44.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_239.1_22099.t1 | gi|270002460|gb|EEZ98907.1| | hypothetical protein TcasGA2_TC004526 [Tribolium castaneum] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_239.1_22099.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_239.1_22099.t1 atggatgtggacagtaaaccaatagagaaggcagagaaatccccagagcagccacatcctaccaaaactgaaaagaagaa acagaagaaaccaaaggagcaaactaaatccgaacagcaacttccctctcccccagagtccttaaacaatagtccccaag ccaatacacaacaaacccaacctctcaacacccaacaaaatgcttcctccttcaacaaacctttagtgaaagctaccact acaacgctcaagaaaacttgtgaaccattcctccaggacggctcctgtagtgaagtgacaccaaaactgatgaatcagaa aggcttccttactattgctggtttctctgaactgaccgatgctgagaatgatgacatcgagccatggttaccccacgtac ctctgatagaaccaaagatagacatagaaacttccaaatatatcgtcgccaaggtgggagacaagttctgtgagctggtc cagcaagagcaggaagccaaaaacctggctggtgatgatgctaagatagcatggaaaagggcggtgacaggagtgcgaga gatgtgtgatgtttgtgacacaacactgttcaacatgcactgggtgtgtcataagtgtggctttgttgtgtgtctggact gctataaagtccgtatcaaggccgtacgccaggagaatggtgaggaggaggaagaccctctaactcgggaactctctgac gagcaacgacaatggctgacctgcagtgctaaccgctcccaacacgagccagataaactcatgctcactcagatcattcc aagagatgcattgtgggaagtaggtaagctgattcatgacatgaagaagaagtggagtataaagaccaagtgtacatgtg gacaggccaattccaagttgatgcagaaaaacggcattaatcagcaatatgtgcagcaggcactgaatcatcttgctaat aataaaaccagtaagaagatggtgaatggtataggggaggaccataaaatgtacaaaggaaaaaagcaagaagctattaa tggaaatgtaaaatataatccagacagtagttcacctcttagtttattggctgatgtcgcatccatggactccgaaaata gtagggatcgcagcgagtctccgtttgggaaaggaatagacaagtatggtaaatcatacaacccaattacggagcctgtg tcacctattgggggtggaaataatactggtgaaggagaaaacgataaaaagaaccctgctagttgctcaaccttgcgtga acttctcacaaaaaccgccaatgttaaaaacgagaaaagcaagaaaagctccaaatctaaatccggaagtagttctttgg atgacattatacagtctgttgtggaaaaacaattaccaaaagacggtgatagtcaacctatgaaactaatgcattacgtt ccaagatttggttacagcggaatgattgctcgtgatgcccctattctagtccataatcttacagaaaccagtgtacttta tcctgatgtcccacattcatggttgtgtgatggtcgtttgttgaggcttcatgatcctaaacacagaggcaatttcaaaa tatttcaggagcagtggaaacgaggtcaaccagttttagtgtcaggagtacacaaagctctgaacaaaaatctgtggtca ccgcagtccttcagcaagcagtttggtcgtgaaaagaatgatcttgtgaattgtagtaatggaaatattattgttggaca tccaatgtcttgtttctgggatggatttgagaaacttctagaacgtctggtagatgaggagaacaatcagcctttgttac tgaagctcaaggattggccaccgggcgatgattttagtgagattatgccaaaccattttgatgatctcatgcaagctttg ccacttccagaatacacacatcgtcacggcaaactgaatctggcctcacggctacctgactttctcgtcagacctgatct tggaccaaagatgtacaatgcctatggttcagcattcagtcctcaggagggaaccacaaatctccatcttgatgtttctg atgctgttaactgtatggtgtacgtgggtatccctgacgacggaccaggtggtaaacaacaccacgtcaatgccgctctg aaagccatcgatgacgcaggctgtgacatcatcacaaaacgtagaatcagggaaatcaatgaagtacctggagcgctttg gcacatctttgatgcggcagatgctgataaaattagggatttcttgaacatggttgggaaggagagaggggaggaggtag agctgcaccatgaccccatacatgatcagagttggtaccttgacaatgagctccgtgacagactgtataaggagtatgga gtactcggctacaccatcgtacagtgtatgggggatgcagtcttcatccctgcaggtgcccctcaccaagtcaagaactt gcatagctgtataaaggtggcagaagattttgtctcaccagagcacctcaaccattgcttcagtctcacccaggaattca gacttttgtctgacacccactctaatcatgaagacaagctgcaggtgaagaacataatttaccacgctgtcaaggattct ttagctgttctcaacaatgcagatcccgatgatgactaa |
|
Protein
| Protein ID | pfu_aug1.0_239.1_22099.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_239.1_22099.t1 MDVDSKPIEKAEKSPEQPHPTKTEKKKQKKPKEQTKSEQQLPSPPESLNNSPQANTQQTQPLNTQQNASSFNKPLVKATT TTLKKTCEPFLQDGSCSEVTPKLMNQKGFLTIAGFSELTDAENDDIEPWLPHVPLIEPKIDIETSKYIVAKVGDKFCELV QQEQEAKNLAGDDAKIAWKRAVTGVREMCDVCDTTLFNMHWVCHKCGFVVCLDCYKVRIKAVRQENGEEEEDPLTRELSD EQRQWLTCSANRSQHEPDKLMLTQIIPRDALWEVGKLIHDMKKKWSIKTKCTCGQANSKLMQKNGINQQYVQQALNHLAN NKTSKKMVNGIGEDHKMYKGKKQEAINGNVKYNPDSSSPLSLLADVASMDSENSRDRSESPFGKGIDKYGKSYNPITEPV SPIGGGNNTGEGENDKKNPASCSTLRELLTKTANVKNEKSKKSSKSKSGSSSLDDIIQSVVEKQLPKDGDSQPMKLMHYV PRFGYSGMIARDAPILVHNLTETSVLYPDVPHSWLCDGRLLRLHDPKHRGNFKIFQEQWKRGQPVLVSGVHKALNKNLWS PQSFSKQFGREKNDLVNCSNGNIIVGHPMSCFWDGFEKLLERLVDEENNQPLLLKLKDWPPGDDFSEIMPNHFDDLMQAL PLPEYTHRHGKLNLASRLPDFLVRPDLGPKMYNAYGSAFSPQEGTTNLHLDVSDAVNCMVYVGIPDDGPGGKQHHVNAAL KAIDDAGCDIITKRRIREINEVPGALWHIFDAADADKIRDFLNMVGKERGEEVELHHDPIHDQSWYLDNELRDRLYKEYG VLGYTIVQCMGDAVFIPAGAPHQVKNLHSCIKVAEDFVSPEHLNHCFSLTQEFRLLSDTHSNHEDKLQVKNIIYHAVKDS LAVLNNADPDDD |
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