Gene
| Gene Model ID | pfu_aug1.0_23929.1_11583 |
|---|---|
| Locus | scaffold23929.1 : 5120 ... 8921 : - |
| To GenomeBrowser | scaffold23929.1:5120..8921 |
| Genes list of scaffold | scaffold23929.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Pfty2B |
| Description | NCBI Blastp search |
| mRNA evidence |
| Study field | Biomineralization |
|---|---|
| Gene name | Pfty2B |
| Description | NCBI BLASTP best hit to BAF42772 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23929.1_11583.t1 | 1 | 1 | Tyrosinase | 1 | 165 | 1.2e-22 | 81.2 | 2.2e-26 | 3.2e-22 | 79.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23929.1_11583.t1 | gi|119852229|dbj|BAF42772.1| | tyrosinase-like protein 2 [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_23929.1_11583.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23929.1_11583.t1 gtatgaagaagcgttacagcgaattcgtcccggcgtggcattgtgctattgggattcaacattagactaccttatgccag gagatagtcagcgaagaacggtagccttctccgacgaacttttcggaaatgggcaaggtgcagttataaatagtcagttt gcaaattggagactttctgatgatactcctcttataagagagatcggacgagtaaacacgagtttaacacgacctggtat tgtagaccttattctaacagatccaaggataaatcgtcatcgatggatagttaatgcaggaacacagacaaatcaaaatc ccagatttggctttattgaccctgatagcgggagaagacatagtttggagagggaacatgataatgctcatgtgtgggtg ggcggaatcatggtgaacgtggcaaggtcgcctgaagaccccgtgttttggtttcatcattgttttgtcgactacgtttg ggagcttttccgacgaaaaattgacccatttgatagattcgatcttcgcaatgactatcctttcgactcattaaatgaag agcatagagcttacgagagaatggccggttttccagcgtacgtaaatatcgacgggtatcacagattcctcaggagaagg tatgcgcctcatcctagatgcagtaacaactgtggtggctcaagatttcttaggtgtaataacattggtccaatgggcaa cccttaccgacgatgtgtatctcttgaaatcgattctgatgtggtgccagcagcggcggctgattccccagcaatggagg gatttgtaggattcagaagtccagcaatgatggctaccggtgccgctgcagctagagtttccatacaagccacatatcaa gtggcaatccaagcaacaataggtcaacgacgaacaattttcaacggtccaaacttcactccctcgtataatgattttag actttaa |
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Protein
| Protein ID | pfu_aug1.0_23929.1_11583.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23929.1_11583.t1 YEEALQRIRPGVALCYWDSTLDYLMPGDSQRRTVAFSDELFGNGQGAVINSQFANWRLSDDTPLIREIGRVNTSLTRPGI VDLILTDPRINRHRWIVNAGTQTNQNPRFGFIDPDSGRRHSLEREHDNAHVWVGGIMVNVARSPEDPVFWFHHCFVDYVW ELFRRKIDPFDRFDLRNDYPFDSLNEEHRAYERMAGFPAYVNIDGYHRFLRRRYAPHPRCSNNCGGSRFLRCNNIGPMGN PYRRCVSLEIDSDVVPAAAADSPAMEGFVGFRSPAMMATGAAAARVSIQATYQVAIQATIGQRRTIFNGPNFTPSYNDFR L |
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