Gene
| Gene Model ID | pfu_aug1.0_23957.1_47616 |
|---|---|
| Locus | scaffold23957.1 : 1 ... 6639 : + |
| To GenomeBrowser | scaffold23957.1:1..6639 |
| Genes list of scaffold | scaffold23957.1 |
| Synonym | pfu_aug2.0_224.1_13820 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | latrophilin Cirl-like isoform |
| Description | 7tm_2 domain; 52% identity to Latrophilin-3 [Camponotus floridanus] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23957.1_47616.t1 | 1 | 1 | 7tm_2 | 2 | 97 | 1.0e-22 | 80.4 | 1.9e-26 | 1.4e-22 | 79.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_23957.1_47616.t1 | gi|332017727|gb|EGI58401.1| | Latrophilin-3 [Acromyrmex echinatior] | 6.0e-27 |
Transcript
| Transcript ID | pfu_aug1.0_23957.1_47616.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23957.1_47616.t1 gaggtgtttgaggcggagcgctcacggagactttggtattatatagtgggttatggagcaccactcatcatagtgggtgt gtcagcaggggtcaaacatgaaggatacggcacagacaaatattgctggttaagtacacaagatggattcatatggagtt ttgtggggccggtcatagtggtactctttatcaatgtgataatgcttagtattgctgtgtacatgatgtgtaagcatgct catactttagcctcatcactgagaacgaaagaaaaatcacgacttcagaaagtcaacatttacttaagttttggagtggg cgacgacgcaggtcctcctcgtcaacattggaaaaaggtcacaaaggtaaatataggaaaagtgatccccgcagcgattc tgaattttttcacaagcacaggaaaggatacaaacagtgtgttcactagaaatggttcagcacgtaccagcaagcagaac ggtcagctgactgaccaggtgctgcacatttatcacgagatagatggtatggcaggtgacctctccgtcatggattgttc cgttatagatacagagtatgtctccgagtactgccagaatcaaatgcaggtctccatggaaaagaggcggtactcttcag ggtcggaggatgccaacgactctactgatgatgctgttgaaaataaaaatagactatcggttctatctgatgactccgct atcaaaaacatttcggattttgcttcttctgaggctgatgcagatgagcagacaaatcttccagtatga |
|
Protein
| Protein ID | pfu_aug1.0_23957.1_47616.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23957.1_47616.t1 EVFEAERSRRLWYYIVGYGAPLIIVGVSAGVKHEGYGTDKYCWLSTQDGFIWSFVGPVIVVLFINVIMLSIAVYMMCKHA HTLASSLRTKEKSRLQKVNIYLSFGVGDDAGPPRQHWKKVTKVNIGKVIPAAILNFFTSTGKDTNSVFTRNGSARTSKQN GQLTDQVLHIYHEIDGMAGDLSVMDCSVIDTEYVSEYCQNQMQVSMEKRRYSSGSEDANDSTDDAVENKNRLSVLSDDSA IKNISDFASSEADADEQTNLPV |
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