Gene
| Gene Model ID | pfu_aug1.0_2397.1_66302 |
|---|---|
| Locus | scaffold2397.1 : 3856 ... 40868 : + |
| To GenomeBrowser | scaffold2397.1:3856..40868 |
| Genes list of scaffold | scaffold2397.1 |
| Synonym | pfu_aug2.0_1323.1_11597 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2397.1_66302.t1 | 1 | 1 | Ribosomal_S5 | 87 | 147 | 6.8e-12 | 44.9 | 2.0e-15 | 1.5e-11 | 43.9 |
| pfu_aug1.0_2397.1_66302.t1 | 1 | 1 | Ribosomal_S5_C | 165 | 234 | 1.2e-12 | 46.9 | 3.1e-16 | 2.3e-12 | 46.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2397.1_66302.t1 | gi|328700367|ref|XP_001950156.2| | PREDICTED: 28S ribosomal protein S5, mitochondrial [Acyrthosiphon pisum] | 1.4013e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2397.1_66302.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2397.1_66302.t1 atgcaagatggcaaagtcacgaatccatttttcatagctggaaaaagagagaaatttaagaaggcggaggaaggagaaga agaagaagaagtcaatttcttcttgaaagataaatatgagtctcaggacttcaaactgatccgacctaaaaatagaagtg caggaattccacccatgcagagaggataccatggcacagatcgcagagggaggagtttaggacctgcagagatcgagacc ctatataatcttgacgactttgatgcaaagctcatagatttggacagagtttcaaacatgacgaaaataggtagagtaac tggatttcgggcattagtggctgtagggaatggaaatggtgtcggaggttatgggttagcaaattctgtagactctaacc aggctatacatgtggctaaattgagagcttttaatcgactgtactttgttgaaagatataatggacacacaatattccac gatttttatgtacaagaacataagacaaaacttacagtacaaagacagagcaaaggatttggtgttgttggtagcttagt tataaaagacctttgttatctcctgggaataaaggatatatatgtgaagactgaaggtgccaggaagaactatagacatg ttgtaagaggattctttgaaggccttttagatcaggaaacacatcaacagctagcagataggaccaatttatacgttgtg gaagtccgggatgatagaggaaactttcccgtcgttgtagcctcaccatctggggatgaagttagagaagctctacaagg ggatgaggacgaatggctaaatgttgattctatgtatagtggagggaaaattaaactcaaaacaaaacgaaaagttccta tgtatgaactgaacaattatccatcatggcagaggcgctgtcaagctgttgaaaaacgacgagggcagtttgaagcaaga tgggaaagatacgcgtcagggctagaaccttctgaggaagagcttaaggaaagatttgtgcctaaacctaaaaacaatta a |
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Protein
| Protein ID | pfu_aug1.0_2397.1_66302.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2397.1_66302.t1 MQDGKVTNPFFIAGKREKFKKAEEGEEEEEVNFFLKDKYESQDFKLIRPKNRSAGIPPMQRGYHGTDRRGRSLGPAEIET LYNLDDFDAKLIDLDRVSNMTKIGRVTGFRALVAVGNGNGVGGYGLANSVDSNQAIHVAKLRAFNRLYFVERYNGHTIFH DFYVQEHKTKLTVQRQSKGFGVVGSLVIKDLCYLLGIKDIYVKTEGARKNYRHVVRGFFEGLLDQETHQQLADRTNLYVV EVRDDRGNFPVVVASPSGDEVREALQGDEDEWLNVDSMYSGGKIKLKTKRKVPMYELNNYPSWQRRCQAVEKRRGQFEAR WERYASGLEPSEEELKERFVPKPKNN |
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