Gene
Gene Model ID | pfu_aug1.0_2397.1_66302 |
---|---|
Locus | scaffold2397.1 : 3856 ... 40868 : + |
To GenomeBrowser | scaffold2397.1:3856..40868 |
Genes list of scaffold | scaffold2397.1 |
Synonym | pfu_aug2.0_1323.1_11597 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2397.1_66302.t1 | 1 | 1 | Ribosomal_S5 | 87 | 147 | 6.8e-12 | 44.9 | 2.0e-15 | 1.5e-11 | 43.9 |
pfu_aug1.0_2397.1_66302.t1 | 1 | 1 | Ribosomal_S5_C | 165 | 234 | 1.2e-12 | 46.9 | 3.1e-16 | 2.3e-12 | 46.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_2397.1_66302.t1 | gi|328700367|ref|XP_001950156.2| | PREDICTED: 28S ribosomal protein S5, mitochondrial [Acyrthosiphon pisum] | 1.4013e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
>Adult tissues | |
Dshape | 2 |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_2397.1_66302.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2397.1_66302.t1 atgcaagatggcaaagtcacgaatccatttttcatagctggaaaaagagagaaatttaagaaggcggaggaaggagaaga agaagaagaagtcaatttcttcttgaaagataaatatgagtctcaggacttcaaactgatccgacctaaaaatagaagtg caggaattccacccatgcagagaggataccatggcacagatcgcagagggaggagtttaggacctgcagagatcgagacc ctatataatcttgacgactttgatgcaaagctcatagatttggacagagtttcaaacatgacgaaaataggtagagtaac tggatttcgggcattagtggctgtagggaatggaaatggtgtcggaggttatgggttagcaaattctgtagactctaacc aggctatacatgtggctaaattgagagcttttaatcgactgtactttgttgaaagatataatggacacacaatattccac gatttttatgtacaagaacataagacaaaacttacagtacaaagacagagcaaaggatttggtgttgttggtagcttagt tataaaagacctttgttatctcctgggaataaaggatatatatgtgaagactgaaggtgccaggaagaactatagacatg ttgtaagaggattctttgaaggccttttagatcaggaaacacatcaacagctagcagataggaccaatttatacgttgtg gaagtccgggatgatagaggaaactttcccgtcgttgtagcctcaccatctggggatgaagttagagaagctctacaagg ggatgaggacgaatggctaaatgttgattctatgtatagtggagggaaaattaaactcaaaacaaaacgaaaagttccta tgtatgaactgaacaattatccatcatggcagaggcgctgtcaagctgttgaaaaacgacgagggcagtttgaagcaaga tgggaaagatacgcgtcagggctagaaccttctgaggaagagcttaaggaaagatttgtgcctaaacctaaaaacaatta a |
Protein
Protein ID | pfu_aug1.0_2397.1_66302.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2397.1_66302.t1 MQDGKVTNPFFIAGKREKFKKAEEGEEEEEVNFFLKDKYESQDFKLIRPKNRSAGIPPMQRGYHGTDRRGRSLGPAEIET LYNLDDFDAKLIDLDRVSNMTKIGRVTGFRALVAVGNGNGVGGYGLANSVDSNQAIHVAKLRAFNRLYFVERYNGHTIFH DFYVQEHKTKLTVQRQSKGFGVVGSLVIKDLCYLLGIKDIYVKTEGARKNYRHVVRGFFEGLLDQETHQQLADRTNLYVV EVRDDRGNFPVVVASPSGDEVREALQGDEDEWLNVDSMYSGGKIKLKTKRKVPMYELNNYPSWQRRCQAVEKRRGQFEAR WERYASGLEPSEEELKERFVPKPKNN |