Gene
| Gene Model ID | pfu_aug1.0_2397.1_66306 |
|---|---|
| Locus | scaffold2397.1 : 80576 ... 83662 : + |
| To GenomeBrowser | scaffold2397.1:80576..83662 |
| Genes list of scaffold | scaffold2397.1 |
| Synonym | pfu_aug2.0_1323.1_11593 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | G-protein coupled receptor 75 |
| Description | NP_001084920.1| probable G-protein coupled receptor 75 [Xenopus laevis |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2397.1_66306.t1 | 1 | 1 | 7TM_GPCR_Srsx | 65 | 244 | 1.5e-07 | 30.8 | 9.4e-11 | 2.8e-07 | 29.9 |
| pfu_aug1.0_2397.1_66306.t1 | 1 | 1 | 7tm_1 | 70 | 355 | 2.9e-30 | 105.2 | 9.8e-34 | 2.9e-30 | 105.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2397.1_66306.t1 | gi|301615003|ref|XP_002936968.1| | 9.0e-31 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2397.1_66306.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2397.1_66306.t1 atgattgaatattatacagcaaagactatgcactatccaacgatcataatacccatggacagaattcattcgcccttaga gaactgcagcgatacgagagacagttcaggagacggagaacgccatgttttctacggcagggtccacattgcgtcactgg ccgtatgtactgttcttatattcttcgccatacttttgggatgcataggaaacggcattgtattattttctgcttttaaa tggaggaaattacggacaaacttcgacgttttagtcattaatttgacgggtgctgattttataacttgtacctgccttac tccgatttttcttatattgttattcgttgatccaccaacgccaaaaatattttgcgggagtatcttatttttgggaacaa tcagtgcaatgttgtcgttgttaactcttgtcgcaattgcgcttcacagacttgcacgcgtcgttgggcatgcgcgaggg acaacaagtttgactcgtatcggaatcatcatagttctcatatggatcgtcagtttagtattgtctatcggcgggacatt tcatatgaccacagactgggacgatagctttaaaaactgccagcctatcattaacagtcctaatccggcaatgcagaact ttgttctttatttcctggcaccagtcactattgtaagcttctctataataactttatcatatataattatagcatgggta gtacaaaaacaggtgaactcagcgagtgaaaataacagtccaaggtgctcgtccccaagggaaaatatgtacagacaatg tagggatttaattggcgacaagaggaagatgtgtagtccgaccagacccagtgtttcctgtgccagtcaaaatctcctga acaaagactctaaagccgtaacaatgtgcttggtggtgattctcaccatgggactctgttggggaccactaattatgtca caatttatagaattggccactggcgaatcaattatattgtatcaggtgaaattatgcggaatcggtcttgttttcctcaa tagtgctctcgacccatatatttatgcccaacacatcggaaaaatgaaacaaaaatacaccaaactgtttaaaattttag tcaagtgttgtgtacgtaaagaccgaacgtccagattacacagttttgcacagaggaatgcaaatttctatcggtcacgt tcacttcattacgatttcgaatcgaacagtgtccccgcaaaaacgtcaacaaacattaaaaagattttggacaaatgtgt gggtagttctcgcggccctgcctctaatttctacagacaaaatcttttaattaacacagaccttaaatacaaaacatcag aatgtgttcagtctaaaacgactttaaaacagaaagcaccgtgtaactttagtgactacagtatgatagcggaggacgcc aatggcataatcaatgcgtcatgtagccaagggacgccaaaagacgggcaaagttggacggaggatcaacttaatatatt gccaaataagtga |
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Protein
| Protein ID | pfu_aug1.0_2397.1_66306.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2397.1_66306.t1 MIEYYTAKTMHYPTIIIPMDRIHSPLENCSDTRDSSGDGERHVFYGRVHIASLAVCTVLIFFAILLGCIGNGIVLFSAFK WRKLRTNFDVLVINLTGADFITCTCLTPIFLILLFVDPPTPKIFCGSILFLGTISAMLSLLTLVAIALHRLARVVGHARG TTSLTRIGIIIVLIWIVSLVLSIGGTFHMTTDWDDSFKNCQPIINSPNPAMQNFVLYFLAPVTIVSFSIITLSYIIIAWV VQKQVNSASENNSPRCSSPRENMYRQCRDLIGDKRKMCSPTRPSVSCASQNLLNKDSKAVTMCLVVILTMGLCWGPLIMS QFIELATGESIILYQVKLCGIGLVFLNSALDPYIYAQHIGKMKQKYTKLFKILVKCCVRKDRTSRLHSFAQRNANFYRSR SLHYDFESNSVPAKTSTNIKKILDKCVGSSRGPASNFYRQNLLINTDLKYKTSECVQSKTTLKQKAPCNFSDYSMIAEDA NGIINASCSQGTPKDGQSWTEDQLNILPNK |
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