Gene
Gene Model ID | pfu_aug1.0_2397.1_66306 |
---|---|
Locus | scaffold2397.1 : 80576 ... 83662 : + |
To GenomeBrowser | scaffold2397.1:80576..83662 |
Genes list of scaffold | scaffold2397.1 |
Synonym | pfu_aug2.0_1323.1_11593 |
Manual annotation
Study field | Environmental Response |
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Gene name | G-protein coupled receptor 75 |
Description | NP_001084920.1| probable G-protein coupled receptor 75 [Xenopus laevis |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2397.1_66306.t1 | 1 | 1 | 7TM_GPCR_Srsx | 65 | 244 | 1.5e-07 | 30.8 | 9.4e-11 | 2.8e-07 | 29.9 |
pfu_aug1.0_2397.1_66306.t1 | 1 | 1 | 7tm_1 | 70 | 355 | 2.9e-30 | 105.2 | 9.8e-34 | 2.9e-30 | 105.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_2397.1_66306.t1 | gi|301615003|ref|XP_002936968.1| | 9.0e-31 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
trochophore | 1 |
>Adult tissues | |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_2397.1_66306.t1 |
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Definition | - |
>pfu_aug1.0_2397.1_66306.t1 atgattgaatattatacagcaaagactatgcactatccaacgatcataatacccatggacagaattcattcgcccttaga gaactgcagcgatacgagagacagttcaggagacggagaacgccatgttttctacggcagggtccacattgcgtcactgg ccgtatgtactgttcttatattcttcgccatacttttgggatgcataggaaacggcattgtattattttctgcttttaaa tggaggaaattacggacaaacttcgacgttttagtcattaatttgacgggtgctgattttataacttgtacctgccttac tccgatttttcttatattgttattcgttgatccaccaacgccaaaaatattttgcgggagtatcttatttttgggaacaa tcagtgcaatgttgtcgttgttaactcttgtcgcaattgcgcttcacagacttgcacgcgtcgttgggcatgcgcgaggg acaacaagtttgactcgtatcggaatcatcatagttctcatatggatcgtcagtttagtattgtctatcggcgggacatt tcatatgaccacagactgggacgatagctttaaaaactgccagcctatcattaacagtcctaatccggcaatgcagaact ttgttctttatttcctggcaccagtcactattgtaagcttctctataataactttatcatatataattatagcatgggta gtacaaaaacaggtgaactcagcgagtgaaaataacagtccaaggtgctcgtccccaagggaaaatatgtacagacaatg tagggatttaattggcgacaagaggaagatgtgtagtccgaccagacccagtgtttcctgtgccagtcaaaatctcctga acaaagactctaaagccgtaacaatgtgcttggtggtgattctcaccatgggactctgttggggaccactaattatgtca caatttatagaattggccactggcgaatcaattatattgtatcaggtgaaattatgcggaatcggtcttgttttcctcaa tagtgctctcgacccatatatttatgcccaacacatcggaaaaatgaaacaaaaatacaccaaactgtttaaaattttag tcaagtgttgtgtacgtaaagaccgaacgtccagattacacagttttgcacagaggaatgcaaatttctatcggtcacgt tcacttcattacgatttcgaatcgaacagtgtccccgcaaaaacgtcaacaaacattaaaaagattttggacaaatgtgt gggtagttctcgcggccctgcctctaatttctacagacaaaatcttttaattaacacagaccttaaatacaaaacatcag aatgtgttcagtctaaaacgactttaaaacagaaagcaccgtgtaactttagtgactacagtatgatagcggaggacgcc aatggcataatcaatgcgtcatgtagccaagggacgccaaaagacgggcaaagttggacggaggatcaacttaatatatt gccaaataagtga |
Protein
Protein ID | pfu_aug1.0_2397.1_66306.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2397.1_66306.t1 MIEYYTAKTMHYPTIIIPMDRIHSPLENCSDTRDSSGDGERHVFYGRVHIASLAVCTVLIFFAILLGCIGNGIVLFSAFK WRKLRTNFDVLVINLTGADFITCTCLTPIFLILLFVDPPTPKIFCGSILFLGTISAMLSLLTLVAIALHRLARVVGHARG TTSLTRIGIIIVLIWIVSLVLSIGGTFHMTTDWDDSFKNCQPIINSPNPAMQNFVLYFLAPVTIVSFSIITLSYIIIAWV VQKQVNSASENNSPRCSSPRENMYRQCRDLIGDKRKMCSPTRPSVSCASQNLLNKDSKAVTMCLVVILTMGLCWGPLIMS QFIELATGESIILYQVKLCGIGLVFLNSALDPYIYAQHIGKMKQKYTKLFKILVKCCVRKDRTSRLHSFAQRNANFYRSR SLHYDFESNSVPAKTSTNIKKILDKCVGSSRGPASNFYRQNLLINTDLKYKTSECVQSKTTLKQKAPCNFSDYSMIAEDA NGIINASCSQGTPKDGQSWTEDQLNILPNK |