Gene
| Gene Model ID | pfu_aug1.0_23999.1_33388 |
|---|---|
| Locus | scaffold23999.1 : 1 ... 8884 : - |
| To GenomeBrowser | scaffold23999.1:1..8884 |
| Genes list of scaffold | scaffold23999.1 |
| Synonym | pfu_aug2.0_54.1_13492 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_23999.1_33388.t1 | 1 | 1 | RNA_pol_Rpb2_4 | 1 | 30 | 1.4e-11 | 44.0 | 8.3e-15 | 2.4e-11 | 43.2 |
| pfu_aug1.0_23999.1_33388.t1 | 1 | 1 | RNA_pol_Rpb2_5 | 53 | 100 | 5.2e-20 | 71.1 | 3.2e-23 | 9.5e-20 | 70.3 |
| pfu_aug1.0_23999.1_33388.t1 | 2 | 1 | RNA_pol_Rpb2_6 | 106 | 206 | 3.39997e-41 | 141.2 | 1.9e-33 | 5.6e-30 | 104.3 |
| pfu_aug1.0_23999.1_33388.t1 | 2 | 2 | RNA_pol_Rpb2_6 | 204 | 262 | 3.39997e-41 | 141.2 | 2.8e-13 | 8.4e-10 | 37.9 |
| pfu_aug1.0_23999.1_33388.t1 | 1 | 1 | RNA_pol_Rpb2_7 | 272 | 334 | 7.6e-20 | 70.9 | 4.8e-23 | 1.4e-19 | 70.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_23999.1_33388.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23999.1_33388.t1 gtgtccatgataagagacatacgtgacagagagataagaatctacacagatgctggtagaatctgccgtcccttgctgat cgtagagaatcaaaagttgttactgaaacagacacatatcaaacagctaaaacagaaagaatacaataactacagttggc aggacttggtggccagcggagttgttgagtacatagatcctttggaggaggagtcgatcatgctggccatgacccctgat gacctcacggacaaggacgtgcagtactgctccacctacacccattgtgagatccaccctgctatgatcctgggggtctg tgcctctattattccattcccagatcacaatcagtctcccagaaacacataccagtctgctatgggtaagcaggccatgg gtgtatacatcactaactatcacgtcaggatggacaccctggctcacggtctactctacccacagaaacctctagtcact acaaggtccatggagtacctcaggttcagggaacttcctgctgggatcaattccattgtggccattgcatcatacaccgg ttataaccaggaagactcggtcattctcaatgcctcagctgtggaaaggggatattttagtcgtatgacaattggtcact tgatcgagtgtttacaagggaaagtagccgctaataaaggagagataggtgacgcaacaccctttaacgacgctgtgaac gtacagaagatctcaaacctactacatcagtatggttatcatctcagagggaatgagagatttttcatttcatttcttgt taattatagtgatggtggattacgttttggagaaatggaacgagattgtcagattgcccatggtgcagcacagtttttac gagaacggctgttcgaggcgtcggatccttacagggtacatgtctgtaacttctgtggtctgatcgccatagcaaacctc agaaatcagacgtttgaatgcagaggatgcaagaataaaacacagctgaagtga |
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Protein
| Protein ID | pfu_aug1.0_23999.1_33388.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_23999.1_33388.t1 VSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKQTHIKQLKQKEYNNYSWQDLVASGVVEYIDPLEEESIMLAMTPD DLTDKDVQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHGLLYPQKPLVT TRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVILNASAVERGYFSRMTIGHLIECLQGKVAANKGEIGDATPFNDAVN VQKISNLLHQYGYHLRGNERFFISFLVNYSDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNFCGLIAIANL RNQTFECRGCKNKTQLK |
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