Gene
| Gene Model ID | pfu_aug1.0_24.1_50554 |
|---|---|
| Locus | scaffold24.1 : 55736 ... 59367 : + |
| To GenomeBrowser | scaffold24.1:55736..59367 |
| Genes list of scaffold | scaffold24.1 |
| Synonym | pfu_aug2.0_15.1_16719 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_24.1_50554.t1 | 4 | 1 | zf-B_box | 16 | 23 | 2.2e-12 | 46.6 | 0.42 | 780.0 | 0.0 |
| pfu_aug1.0_24.1_50554.t1 | 2 | 1 | zf-RING_UBOX | 18 | 58 | 7.5e-07 | 28.7 | 4.0e-10 | 7.5e-07 | 28.7 |
| pfu_aug1.0_24.1_50554.t1 | 4 | 2 | zf-B_box | 57 | 67 | 2.2e-12 | 46.6 | 0.22 | 410.0 | 0.9 |
| pfu_aug1.0_24.1_50554.t1 | 4 | 3 | zf-B_box | 92 | 128 | 2.2e-12 | 46.6 | 1.8e-08 | 3.3e-05 | 23.6 |
| pfu_aug1.0_24.1_50554.t1 | 2 | 2 | zf-RING_UBOX | 108 | 119 | 7.5e-07 | 28.7 | 0.95 | 1800.0 | -1.3 |
| pfu_aug1.0_24.1_50554.t1 | 4 | 4 | zf-B_box | 146 | 185 | 2.2e-12 | 46.6 | 8.3e-11 | 1.5e-07 | 31.1 |
Transcript
| Transcript ID | pfu_aug1.0_24.1_50554.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24.1_50554.t1 atgcgcttcgataatcccacatttttaacagacatgtccgatatttacttgtgtcgcatctgcaaagagaaattcaacgg tatagaccatgtgcctattctattaccttgtcttcacgtttttgggaaaggatgtttgataaaggaaatcaatgcaggca agttcaaatgtccggaatgttttctaagcgttgatgcccataatataacagacaacaagaggtttccaattgtcaagaac tttatagagacaccagcaacatatcatggtggtcgatgtggtttttgtgaaatggaaaaaagtgaatacttttgtttcgc gtgttcctgtgcgctgtgcaagaactgttatgatatgcatttcaaattcagattcattacccatattatcgtcggtattg gcacacacaagtttgtaaatgaaaatcagatacaaagagaagtgtgtcaacaacactttcctgaagaatgtgaaatgttc tgcacgaaatgtaatgaaactatttgttcaacatgtgcagttatggaacataaaaatcataagattctgcaaattgagga aaagatcaaatctgtaacaaagaaacttgcgaaggtaaagaaaagaagtatattgtttgtcgaagaaatagaaaaggcac aggcaatccattctagttccagacgcccaacatctgaaagtttacaaagagacaatatgagtaaaactttagaatcagct gaagctattctgcagagatgtaactatgcgatagatatttctattcttgttgctgttgaacagagacttgaagatttaga ttataaatttgacgagtaa |
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Protein
| Protein ID | pfu_aug1.0_24.1_50554.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24.1_50554.t1 MRFDNPTFLTDMSDIYLCRICKEKFNGIDHVPILLPCLHVFGKGCLIKEINAGKFKCPECFLSVDAHNITDNKRFPIVKN FIETPATYHGGRCGFCEMEKSEYFCFACSCALCKNCYDMHFKFRFITHIIVGIGTHKFVNENQIQREVCQQHFPEECEMF CTKCNETICSTCAVMEHKNHKILQIEEKIKSVTKKLAKVKKRSILFVEEIEKAQAIHSSSRRPTSESLQRDNMSKTLESA EAILQRCNYAIDISILVAVEQRLEDLDYKFDE |
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